PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G10890.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 633aa    MW: 70084.3 Da    PI: 8.6295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G10890.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08535556627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C++f rtGtCk+Gd+C++ H++
  OGLUM01G10890.2 535 CQHFVRTGTCKFGDSCRYFHPK 556
                      ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.207.1E-2665172No hitNo description
CDDcd14137067377No hitNo description
SuperFamilySSF561122.43E-8571400IPR011009Protein kinase-like domain
PROSITE profilePS5001144.14572374IPR000719Protein kinase domain
PfamPF000695.5E-6572374IPR000719Protein kinase domain
SMARTSM002202.3E-8972374IPR000719Protein kinase domain
PROSITE patternPS00107078102IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.107.0E-59173386No hitNo description
PROSITE patternPS001080193205IPR008271Serine/threonine-protein kinase, active site
SMARTSM004519.2E-4469504IPR003604Zinc finger, U1-type
SuperFamilySSF576674.56E-13470512No hitNo description
PfamPF062207.2E-9471503IPR013085Zinc finger, U1-C type
SMARTSM003561.1E-4531556IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6533556IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6534556IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5534554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831534557IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0042538Biological Processhyperosmotic salinity response
GO:0046777Biological Processprotein autophosphorylation
GO:1901002Biological Processpositive regulation of response to salt stress
GO:0005829Cellular Componentcytosol
GO:0003676Molecular Functionnucleic acid binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MGSVGVAPSG LKNSSSTSMG AEKLPDQMHD LKIRDDKEVE ATIINGKGTE TGHIIVTTTG  60
GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CLETGETVAI KKVLQDKRYK NRELQTMRLL  120
DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI  180
CRALAYIHNS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA  240
PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM  300
NPNYTEFKFP QIKAHPWHKV QSLSISVVIL SAIVQYQVFH KRLPPEAVDL VSRLLQYSPN  360
LRCTAVEALV HPFFDELRDP NARLPNGRFL PPLFNFKPHE LKGIPSDIMA KLIPEHVKKQ  420
CSYAGSLFAQ QQKLLEGEDQ NSEELSRERG EAAEGGKKGG GGRGSEMPLG KYYCDYCEKQ  480
FQDTPAARKR HLDGAQHHRA RALWYDAVRR QELHGGGGGA PPLLHQPGAA AIGVCQHFVR  540
TGTCKFGDSC RYFHPKPPPA NPGPAPSGPV SGPMAQQSNI QGSQPNFVGY QAADGSSFSG  600
NILGGHTSWG NLPPSLRPPP EGGYPPFPFV DWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t31_A1e-1685642240387Glycogen synthase kinase-3 beta
5t31_B1e-1685642240387Glycogen synthase kinase-3 beta
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454461GGKKGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0596210.0AB059621.1 Oryza sativa OSKgamma mRNA for shaggy-related protein kinase gamma, complete cds.
GenBankAK0997420.0AK099742.1 Oryza sativa Japonica Group cDNA clone:J013091C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610903.10.0shaggy-related protein kinase alpha
SwissprotP511390.0MSK3_MEDSA; Glycogen synthase kinase-3 homolog MsK-3
TrEMBLA0A0D9Y6470.0A0A0D9Y647_9ORYZ; Uncharacterized protein
STRINGOGLUM01G10890.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-23C3H family protein
Publications ? help Back to Top
  1. Pay A, et al.
    The MsK family of alfalfa protein kinase genes encodes homologues of shaggy/glycogen synthase kinase-3 and shows differential expression patterns in plant organs and development.
    Plant J., 1993. 3(6): p. 847-56
    [PMID:8401615]