PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G11340.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 470aa    MW: 49317.3 Da    PI: 7.9939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G11340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-105682127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++rtG C yG++C+++H++
  OGLUM01G11340.1 56 PGEADCVYYLRTGACGYGENCRYNHPR 82
                     57899********************96 PP
2zf-CCCH37.34.7e-12106132127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++++GtCk+G++Ck+ H++
  OGLUM01G11340.1 106 PGQPVCEYYMKNGTCKFGSNCKYDHPR 132
                      5789*********************96 PP
3zf-CCCH33.47.6e-11151176227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ +tG+Ck+G++CkF+H++
  OGLUM01G11340.1 151 GEKDCTYYVKTGHCKFGSTCKFHHPE 176
                      5789********************96 PP
4zf-CCCH37.34.7e-12304330127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G+ Ck++H++
  OGLUM01G11340.1 304 PGQPECQYYLKTGSCKFGSACKYHHPQ 330
                      5789*********************97 PP
5zf-CCCH28.62.5e-09352376327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +C ++ + G+Ck+G++CkF H++
  OGLUM01G11340.1 352 SQPCAYYTQHGFCKFGPTCKFDHPM 376
                      679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2115583IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-65582IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-75782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65984IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-46182IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765105133IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6108133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5110133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502149177IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5149176IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8151176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6152175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413303331IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6303330IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9305330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5307330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4309329IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5349376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69349377IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6351379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5353374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEPYAAAEGG GGGGGGGGGG GSTDTGLEES MWRMGLGGGG GGGGEAVAAG RLPERPGEAD  60
CVYYLRTGAC GYGENCRYNH PRDRAAAAVL NGGGKTTHSA EYPERPGQPV CEYYMKNGTC  120
KFGSNCKYDH PREGSVQAVM LNSSGYPLRS GEKDCTYYVK TGHCKFGSTC KFHHPEIGGV  180
SETPNMYPPV QPQPISSSHP YQHLAGWQMG RPPVLPGSFL SGSYPPMMLP STVVPMQGWN  240
PYISPVNQVA SAGGHQTVQA GPFYGLSHQG PSAAVTYGSQ YAPLSSSTMP SSSSKQEPAF  300
PARPGQPECQ YYLKTGSCKF GSACKYHHPQ YLNTPKSNCM LSPLGLPLRP GSQPCAYYTQ  360
HGFCKFGPTC KFDHPMGTLS YSPSASSITD LPIAPYPLNY AVAPVAPPSS SSDLRPEYLL  420
TKEFSANQSA SPGTTCGPAG AMLKAYAPHM LIRPQTSGAG GMVTTHGGEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0D9Y6990.0A0A0D9Y699_9ORYZ; Uncharacterized protein
STRINGOGLUM01G11340.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-115C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]