PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G11830.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 164aa MW: 18828.5 Da PI: 4.5714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G11830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.9	2.1e-10	42	106	1	68
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 +fY++YA++ GF ++k++s++ ++++ + t+ Cs++gk++ ++k+ + +++++ r++ + ++ OGLUM01G11830.1 42 DFYKKYARKKGFAITKRSSRTGQDENIVQYFTLACSRQGKAQYSSKN---TLKPNPSIRMDSSSEAVI 106 6*******************9999999*************999...444555555444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-7	42	104	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MEDDFHIEEM EEESEDQATE GDVELAEPKK GMVFDSLDDA FDFYKKYARK KGFAITKRSS 60 RTGQDENIVQ YFTLACSRQG KAQYSSKNTL KPNPSIRMDS SSEAVIKPKQ TCTQPYTGSK 120 NRASPFEEER SKGRPSRTEN ESNEENRIDE QNWSKEESGI DEKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226788	1e-107	AC226788.1 Oryza minuta clone OM__Ba0203J01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171727.1	2e-29	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171728.1	2e-29	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171729.1	2e-29	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171730.1	2e-29	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_020171731.1	2e-29	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
TrEMBL	A0A0D9Y6F5	1e-117	A0A0D9Y6F5_9ORYZ; Uncharacterized protein
STRING	OGLUM01G11830.1	1e-118	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16056	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	2e-08	FAR1-related sequence 8