PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G13370.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 650aa    MW: 68130.2 Da    PI: 6.6739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G13370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.3e-16401447455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  OGLUM01G13370.1 401 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 447
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.96E-17394451No hitNo description
SuperFamilySSF474591.96E-20395456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-20401455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-13401447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17403452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MHVFVFGSVF CVCRSDGNDF AELLWENGQA VVHGRKKHPQ PAFPPFGFFG GTGGGGGGSS  60
SRAQEKQPGG IDAFAKVGGG FGALGMAPAV HDFASGFGAT TQDNGDDDTV PWIHYPIIDD  120
EDAAAPAALA AADYGSDFFS ELQAAAAAAA AAAPPTDLAS LPASNHNGAT NNRNAPVANT  180
TTREPSKESH GGLSVPTTRA EPQPQPQLAA AKLPRSSGSG GGEGVMNFSL FSRPAVLARA  240
TLESAQRTQG TDNKASNVTA SNRVESTVVQ TASGPRSAPA FADQRAAAWP PQPKEMPFAS  300
TAAAPMAPAV NLHHEMGRDR AGRTMPVHRT ETRKAPEATV ATSSVCSGNG AGSDELWRQQ  360
KRKCQAQAEC SASQDDDLDD EPGVLRKSGT RSTKRSRTAE VHNLSERRRR DRINEKMRAL  420
QELIPNCNKI DKASMLDEAI EYLKTLQLQV QMMSMGTGLC IPPMLLPTAM QHLQIPPMAH  480
FPHLGMGLGY GMGVFDMSNT GALQMPPMPG AHFPCPMIPG ASPQGLGIPG TSTMPMFGVP  540
GQTILSSASS VPPFASLAGL PVRPSGVPQV SGAMANMVQD QQQGIANQQQ QCLNKEAIQG  600
ANPGDSQMQI IMQGDNENFR IPSSAQTKSS QFSDGTGKGT NARERDGAET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405410ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0D9Y6Z40.0A0A0D9Y6Z4_9ORYZ; Uncharacterized protein
STRINGOGLUM01G13370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-34phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]