 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OGLUM01G13750.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 411aa MW: 43814.5 Da PI: 7.161 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM01G13750.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 22.1 | 2.8e-07 | 209 | 251 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR r+ ++++ L l+P++ +K + a++ A+eYI++L
OGLUM01G13750.1 209 KKEKQRRLRLTEKYNALMLLIPNR-----TKEDRATVISDAIEYIQEL 251
57*********************9.....8****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MPATSLSLSL VQASEKARQQ PSARKMYHPQ CELLMPLESL EMDVGQSHLA AAVAAAMPGE 60
LNFHLLHSLD AAAAAASSTA ASASSQPTVD YFFGGADQQP PPPPAVQYDQ LAAPHHHQTV 120
AMLRDYYGGH YPPAAAAAAA TEAYFRGGPR TAGSSSLVFG PADDESAFMV GPFESSPTPR 180
SGGGGGGGRK RSRATAGFHG GGPANGVEKK EKQRRLRLTE KYNALMLLIP NRTKEDRATV 240
ISDAIEYIQE LGRTVEELTL LVEKKRRRRE MQGDVVDAAP SSVVAGMDQA AESSEGEVMA 300
AAAAAAMGAV APPPRQAPIR STYIQRRSKE TFVDVRIVED DVNIKLTKRR RDGCLAAASR 360
ALDDLRLDLV HLSGGKIGDC HIYMFNTKIH PGSPVFASAV ASRLIEVVDE Y
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 187 | 193 | GRKRSRA |
| 2 | 263 | 268 | KKRRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK106850 | 0.0 | AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence. |
