PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G23800.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 754aa MW: 81272.8 Da PI: 7.805

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G23800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.3e-38	45	142	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+l+++++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l+++kael OGLUM01G23800.1 45 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARVKAEL 138 7********************************************************************************************* PP DUF260 95 allk 98 +++k OGLUM01G23800.1 139 DAVK 142 9886 PP
2	DUF260	99.3	3.8e-31	262	368	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaC++l+r+C+++C+la++fpa +qp + f+n+ +lFG+ nv+ +l a+ ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++l OGLUM01G23800.1 262 ACAACAHLGRACPTGCPLARCFPAagDQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLEREL 355 7*******************996645456699*************999889999****************************** PP DUF260 88 eqlkaelallkee 100 ++lkaela++++ OGLUM01G23800.1 356 DCLKAELATAQSA 368 ******99875 PP
3	DUF260	73.2	5.3e-23	600	684	17	100
DUF260 17 vlapyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 v a+++ + +++ ++ n+++lFG++n+ ++++a+ +e+r+d+mss+ yeA+++ar+P+yGa+gvi++l++++e++ a+l++ +++ OGLUM01G23800.1 600 VPARVILHgDEKVRLLNAQRLFGTRNIRRFVQATLPEKRDDLMSSIKYEAQVWARNPQYGATGVIWHLERKVERELAKLSKPRQK 684 33444433467899****************************************************************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.772	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.4E-35	45	142	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	18.711	261	369	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-27	262	366	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	10.449	579	685	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-19	606	680	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MGDEEAGPSS SGHSSPTSNT STTPPPPPQP PPPPPPPPPP PHPQACAACK HQRRRCTPEC 60 RLARYFPANQ PARFRNAHRL FGIKNILRVM ASASEELRDD AMKSVVYESD AWVIDPVGGA 120 AGIVKGLSQE LARVKAELDA VKGLIELHSR AAAQQQQQPP VAVASNGGFL PSPPPPPQGQ 180 QLLLFLPPPP PTMMLQDGHC DDETVEYDYL VDPPAVDAAA ATSTAPERPL VSPPISMAQP 240 WRPFVADISP VAVADDDDPP AACAACAHLG RACPTGCPLA RCFPAAGDQP ADGRLFRNAF 300 RLFGVGNVVG FLLAAGGDPG KRRDAAVSVA YEADARADDP VRGAHGVVMD LERELDCLKA 360 ELATAQSALA RHRQYAQPPS PPPPPPPDAL DRARALNYFC HGCYGDVKAL PQFPGERQRR 420 LIHVASLLWV PHGDLAGSDG IHPALEQQLD DLGMPLAGSD VHHHDRPLLR DLQPHLHRRP 480 IPAEIWPERR FHPRPPTSTS LTSPSLPSLP VIPRPHPPTS LSIPLPSASP HQHPPTLPSI 540 PSPPATPVIA QIAVDIGDNG GRSVPCAQVI STAAASVPTA AAEAVMRHLQ GAEDGVLAGV 600 PARVILHGDE KVRLLNAQRL FGTRNIRRFV QATLPEKRDD LMSSIKYEAQ VWARNPQYGA 660 TGVIWHLERK VERELAKLSK PRQKLEMCKN LAAKKSIPEA KGVGVRQVTS KEQEQERQYQ 720 ACPARISAWT PRLFVHRSAC EIPISQMESR IACM

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MGDEEAGPSS SGHSSPTSNT STTPPPPPQP PPPPPPPPPP PHPQACAACK HQRRRCTPEC  60
RLARYFPANQ PARFRNAHRL FGIKNILRVM ASASEELRDD AMKSVVYESD AWVIDPVGGA  120
AGIVKGLSQE LARVKAELDA VKGLIELHSR AAAQQQQQPP VAVASNGGFL PSPPPPPQGQ  180
QLLLFLPPPP PTMMLQDGHC DDETVEYDYL VDPPAVDAAA ATSTAPERPL VSPPISMAQP  240
WRPFVADISP VAVADDDDPP AACAACAHLG RACPTGCPLA RCFPAAGDQP ADGRLFRNAF  300
RLFGVGNVVG FLLAAGGDPG KRRDAAVSVA YEADARADDP VRGAHGVVMD LERELDCLKA  360
ELATAQSALA RHRQYAQPPS PPPPPPPDAL DRARALNYFC HGCYGDVKAL PQFPGERQRR  420
LIHVASLLWV PHGDLAGSDG IHPALEQQLD DLGMPLAGSD VHHHDRPLLR DLQPHLHRRP  480
IPAEIWPERR FHPRPPTSTS LTSPSLPSLP VIPRPHPPTS LSIPLPSASP HQHPPTLPSI  540
PSPPATPVIA QIAVDIGDNG GRSVPCAQVI STAAASVPTA AAEAVMRHLQ GAEDGVLAGV  600
PARVILHGDE KVRLLNAQRL FGTRNIRRFV QATLPEKRDD LMSSIKYEAQ VWARNPQYGA  660
TGVIWHLERK VERELAKLSK PRQKLEMCKN LAAKKSIPEA KGVGVRQVTS KEQEQERQYQ  720
ACPARISAWT PRLFVHRSAC EIPISQMESR IACM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-20	46	372	12	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-20	46	372	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP003413	0.0	AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9YAR8	0.0	A0A0D9YAR8_9ORYZ; Uncharacterized protein
STRING	OGLUM01G23800.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19872	8	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-25	LOB domain-containing protein 22