PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G23840.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 411aa    MW: 43343 Da    PI: 5.5898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G23840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.64.9e-3945142198
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+l+++++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l+++kael
  OGLUM01G23840.1  45 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARVKAEL 138
                      7********************************************************************************************* PP

           DUF260  95 allk 98 
                      +++k
  OGLUM01G23840.1 139 DAVK 142
                      9887 PP
2DUF260100.71.4e-312623681100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                      aCaaC++l+r+C+++C+la++fpa  +qp   + f+n+ +lFG+ nv+ +l a+  ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++l
  OGLUM01G23840.1 262 ACAACAHLGRACPTGCPLARCFPAagDQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLEREL 355
                      7*********************996645456699*****************999889999********************************** PP

           DUF260  88 eqlkaelallkee 100
                      ++lkaela++++ 
  OGLUM01G23840.1 356 DCLKAELATAQSA 368
                      ********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.77244145IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3545142IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089118.711261369IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-28262366IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGDEEAGPSS SGHSSPTSNT STTPPPPPQP PPPPPPPPPP PHPQACAACK HQRRRCTPEC  60
RLARYFPANQ PARFRNAHRL FGIKNILRVM ASASEELRDD AMKSVVYESD AWVIDPVGGA  120
AGIVKGLSQE LARVKAELDA VKGLIELHSR AAAQQQQQPP VAVASNGGFL PSPPPPPQGQ  180
QLLLFLPPPP PTMMLQDGHC DDETVEYDYL VDPPAVDAAA ATSTAPERPL VSPPISMAQP  240
WRPFVADISP VAVADDDDPP AACAACAHLG RACPTGCPLA RCFPAAGDQP ADGRLFRNAF  300
RLFGVGNVVG FLLAAGGDPG KRRDAAVSVA YEADARADDP VRGAHGVVMD LERELDCLKA  360
ELATAQSALA RHRQYAQPPS PPPPPPPDAL DRARALNYFC HGCYGDVDGA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-204637212114LOB family transfactor Ramosa2.1
5ly0_B2e-204637212114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033080.0AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBankAP0034130.0AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638310.17e-93LOB domain-containing protein 24
TrEMBLA0A0D9YAR80.0A0A0D9YAR8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YAS40.0A0A0D9YAS4_9ORYZ; Uncharacterized protein
STRINGOGLUM01G23800.10.0(Oryza glumipatula)
STRINGOGLUM01G23840.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18117810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-26LOB domain-containing protein 22