PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G24040.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 178aa MW: 19723 Da PI: 10.2656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G24040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.3e-09	10	48	3	32
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C.......... CS HLH 3 rahnerErrRRdriNsafeeLrellPk.as........k 32 ++h + ErrRR+++N+ f L++l+P+ + OGLUM01G24040.1 10 KNHVMSERRRREKLNEMFLILKSLVPSiDKelerrvqeL 48 5899**********************9775555555553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.159	7	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-9	10	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-8	10	38	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.04E-5	10	39	No hit	No description
Pfam	PF00010	3.3E-6	11	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MNRAAGSSIK NHVMSERRRR EKLNEMFLIL KSLVPSIDKE LERRVQELES GKKVSRPPKR 60 KPCSETIIGG GGGSGAGAVK EHHHWVLSES QEGTPSDVRV IIMDKDELHL EVHCRWKELM 120 MTRLFDAIKS LRLDILSVQS SVPDGLLGLK IRAKYASSAA VAPAMISETL RTAVAAKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	20	ERRRRE
2	16	21	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-149	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638330.1	1e-103	anthocyanin regulatory R-S protein
Swissprot	P13526	2e-46	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A0D9YAU6	1e-126	A0A0D9YAU6_9ORYZ; Uncharacterized protein
STRING	OGLUM01G24040.1	1e-127	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	5e-17	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]