PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G25620.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 303aa    MW: 31348.8 Da    PI: 7.6357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G25620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-12137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ +  +lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  OGLUM01G25620.1 137 PWSEEEHRLFLVGLDKLGKGDWRGISRSYVTTRTPTQVASHAQKF 181
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.374130186IPR017930Myb domain
SuperFamilySSF466891.01E-16131187IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-17133185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-9134177IPR009057Homeodomain-like
SMARTSM007176.0E-9134184IPR001005SANT/Myb domain
PfamPF002495.5E-10137180IPR001005SANT/Myb domain
CDDcd001671.58E-8137182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCSS SSASAGHRDT TMLCDGGGGG DGGGGLRLFG VQVHVAAGGG  60
GGGGGGGGLS MKKSYSMDCL QLAAAGAAPG SLVSPSSSSS SSMLLSIDEG GLERASNGYL  120
SDGPHGRIVQ ERKKGVPWSE EEHRLFLVGL DKLGKGDWRG ISRSYVTTRT PTQVASHAQK  180
FFLRQSSIGK KKRRSSLFDM MPICENGARV SEQLSGEGAA AAAASTSLSL MNTHESSSDR  240
VAAIDLNSTE EDDTVGASGR PFFPVVLMEQ QQQASHGHGH HHHCTPLDLE LGMSVSSTPS  300
IGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8342880.0CT834288.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648805.11e-168transcription factor KUA1
TrEMBLA0A0D9YBE60.0A0A0D9YBE6_9ORYZ; Uncharacterized protein
STRINGOGLUM01G25620.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-43MYB_related family protein