PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G26700.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 107aa MW: 11887.3 Da PI: 6.516

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G26700.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	6.8e-11	62	100	4	44
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +T+eE+++ + +++ G++ W++Ia +++ gRt++++ +w OGLUM01G26700.1 62 FTEEEEDIVFRMHRLVGNR-WELIAGRIP-GRTAEEVEKFW 100 9****************.*****.*****9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.65	54	107	IPR017930	Myb domain
SMART	SM00717	3.5E-8	58	106	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-9	61	101	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-13	61	100	IPR009057	Homeodomain-like
CDD	cd00167	1.36E-9	62	100	No hit	No description
Pfam	PF00249	8.5E-10	62	100	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010026	Biological Process	trichome differentiation
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0048765	Biological Process	root hair cell differentiation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MESSSGSQLG KNSKTSDGRE TKATSSLLLL ITAIHFVALC PKGENEGAGK EVNSTTQNFV 60 HFTEEEEDIV FRMHRLVGNR WELIAGRIPG RTAEEVEKFW AIKHQAT

Functional Description ? help Back to Top
Source	Description
UniProt	MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269\|PubMed:22168948}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951933	4e-52	JF951933.1 Aegilops speltoides clone TaMYB50 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644376.1	2e-38	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Refseq	XP_006644377.1	2e-38	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Refseq	XP_015697875.1	2e-38	PREDICTED: MYB-like transcription factor ETC3 isoform X1
Swissprot	B3H4X8	2e-19	TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBL	A0A0D9YBS4	7e-73	A0A0D9YBS4_9ORYZ; Uncharacterized protein
STRING	OGLUM01G26700.1	1e-73	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5275	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01060.1	2e-22	CAPRICE-like MYB3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang M,Hu Y,Liu X,Li Y,Hou X Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci, 2015. 6: p. 955 [PMID:26579186]