PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G26760.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 89aa MW: 10259.5 Da PI: 6.5152

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G26760.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.3	5.5e-11	33	74	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T+eE +l + +++ G++ W++Ia +++ gRt+k++ +w +y OGLUM01G26760.1 33 FTEEEKDLVFRMHRLVGNR-WELIAGRIP-GRTAKEVEMFWAQY 74 9****************.*****.******999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.0E-8	29	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-10	32	75	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-13	32	74	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.34	33	75	IPR017877	Myb-like domain
Pfam	PF00249	2.5E-10	33	74	IPR001005	SANT/Myb domain
CDD	cd00167	1.85E-8	33	74	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MDSSSGSQGK NSKTSDGCET KEVNNTAQNF VHFTEEEKDL VFRMHRLVGN RWELIAGRIP 60 GRTAKEVEMF WAQYTGGEIW CLETFPRRM

Functional Description ? help Back to Top
Source	Description
UniProt	MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269\|PubMed:22168948}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833447	1e-115	CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015621960.1	8e-53	MYB-like transcription factor ETC3 isoform X1
Swissprot	B3H4X8	2e-18	TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBL	A0A0D9YBT1	7e-61	A0A0D9YBT1_9ORYZ; Uncharacterized protein
STRING	OGLUM01G26760.1	1e-61	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5275	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01060.1	6e-21	CAPRICE-like MYB3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang M,Hu Y,Liu X,Li Y,Hou X Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development. Front Plant Sci, 2015. 6: p. 955 [PMID:26579186]