PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G26760.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 78aa    MW: 8897.91 Da    PI: 7.6192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G26760.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-103371444
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +T+eE +l  + +++ G++ W++Ia +++ gRt+k++  +w
  OGLUM01G26760.2 33 FTEEEKDLVFRMHRLVGNR-WELIAGRIP-GRTAKEVEMFW 71
                     9******************.*********.******98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-72977IPR001005SANT/Myb domain
SuperFamilySSF466893.28E-93272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-133271IPR009057Homeodomain-like
CDDcd001671.92E-83371No hitNo description
PROSITE profilePS500906.8533371IPR017877Myb-like domain
PfamPF002491.5E-93371IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MDSSSGSQGK NSKTSDGCET KEVNNTAQNF VHFTEEEKDL VFRMHRLVGN RWELIAGRIP  60
GRTAKEVEMF WAVKHQNT
Functional Description ? help Back to Top
Source Description
UniProtMYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8334471e-127CT833447.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA029N02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644378.16e-44PREDICTED: MYB-like transcription factor ETC3
SwissprotB3H4X82e-19TCL2_ARATH; MYB-like transcription factor TCL2
TrEMBLA0A0D9YBT21e-51A0A0D9YBT2_9ORYZ; Uncharacterized protein
STRINGOBART01G22980.19e-52(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.13e-22CAPRICE-like MYB3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang M,Hu Y,Liu X,Li Y,Hou X
    Arabidopsis LEAFY COTYLEDON1 controls cell fate determination during post-embryonic development.
    Front Plant Sci, 2015. 6: p. 955
    [PMID:26579186]