PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G29870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 348aa    MW: 37656.1 Da    PI: 9.2608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G29870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.51.2e-31682241128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk...............kvkaeekewyfFskrdkkyatg 71 
                      lp+G++F+Ptd+el+ e+L+ k++ +       ++++   i+   +i++++P++Lp                +v ++    +fF++ +k+y+tg
  OGLUM01G29870.1  68 LPAGVKFDPTDQELL-EHLEGKARPDArklhplIDEFIPtIEGEnGICYTHPERLPGtsgrdvetigavrhgRVGKDGLIRHFFHRPSKAYTTG 160
                      799************.99****998885665443333333665557**********5589999988866544333333355************* PP

              NAM  72 krknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +rk+r+++      + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OGLUM01G29870.1 161 TRKRRKVHtdeqggETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 224
                      *****744456555778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3560243IPR003441NAC domain
PROSITE profilePS5100532.03868243IPR003441NAC domain
PfamPF023659.9E-1569224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAKKQQ QQQVSQHVNL IKTCPSCGHR AQYEQAAAAA  60
TIQDLPGLPA GVKFDPTDQE LLEHLEGKAR PDARKLHPLI DEFIPTIEGE NGICYTHPER  120
LPGTSGRDVE TIGAVRHGRV GKDGLIRHFF HRPSKAYTTG TRKRRKVHTD EQGGETRWHK  180
TGKTRPVFTG GKLKGYKKIL VLYTNYGKQR KPEKTNWVMH QYHLGSDEEE KDGELVVSKV  240
FYQTQPRQCG GGSTATAKDL SVDLVAGNNI KASNAAAEHH HNDGVGGGGH GGNNSSMLKE  300
AAGIVDFYNP AAALIGYSQA APNNRAAASA HLTMPNFEVH TGGAGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0603070.0AK060307.1 Oryza sativa Japonica Group cDNA clone:001-007-A11, full insert sequence.
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
GenBankAP0032230.0AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBankAP0037060.0AP003706.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1125_C04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626614.10.0NAC domain-containing protein 73 isoform X2
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0D9YCZ00.0A0A0D9YCZ0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G29870.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]