PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G29920.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1869aa MW: 208228 Da PI: 5.2926

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G29920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	49	103	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k OGLUM01G29920.1 49 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 103 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-16	37	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-16	37	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	44	104	IPR001356	Homeobox domain
SMART	SM00389	3.1E-15	46	108	IPR001356	Homeobox domain
CDD	cd00086	1.89E-13	49	104	No hit	No description
Pfam	PF00046	3.5E-15	49	103	IPR001356	Homeobox domain
SMART	SM00571	6.2E-11	647	706	IPR018501	DDT domain
PROSITE profile	PS50827	12.747	647	706	IPR018501	DDT domain
Pfam	PF02791	2.4E-12	652	703	IPR018501	DDT domain
Pfam	PF05066	1.6E-15	823	891	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.1E-10	1046	1088	IPR028942	WHIM1 domain
Pfam	PF15613	1.8E-11	1224	1296	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1869 aa Download sequence Send to blast
MDDGDGAAPA EGSAASTPPP APPAAAAAAA AAVSAGSTGA SGSGEKTVKR MMKSPYQLEV 60 LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR REEEAAAVPL 120 MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL SAPDIGRRYY 180 EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL PPGSFGAPIV 240 PEQQKQHVRS YDTKIYSRHD SKLLKASAFF PSVEHPFVPN SIAGKRKSMV GNLPPVHPHA 300 GSRAVHEYQF LPEQPSDRYE GASRSHEGAS RSHYYDTPVE ASNSRMSSHT PGSHLLRGSD 360 EAAPGYAFQG QMSGSGHLPQ SGRREVLPAV PTDYEMIQSN SDLNSVPVEG QYGISQVAGI 420 ENSLLPSERR AYHDEDGSRV DRKRKHNEEA KIAKEVEAHE RRIRKELEKQ DMMKRKREEQ 480 MRKEMERHDR ERRKEEERLL RERQREQERF LREQRREHER MEKFMQKQSR RAEKQRQKEE 540 LRKEKEAARQ KAANERATAR RIAREYMELV EDERLELMEL AAQSKGLPSM LSLDSDTLQQ 600 LDSFRGMLTP FPPEPVRLKE PFSIKPWTVS EDNVGNLLMM DKQIDLFDTL ASLHQVWKFS 660 ITFADVLGLS SVTFDEFVQS LHDYDSRLLG ELHIALLKSI IKDIEDVSRT PSVALAVNPA 720 GGHPQIVEGA YAWGFNIRSW QRHLNVLTWP EILRQFALSA GFGPQLKKRN AEDVYYRDDN 780 EGHDGQDVIS TLRNGSAAVH AAALMKERGY THRRRSRHRL TPGTVKFAAF HVLSLEGSKG 840 LTILEVAERI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS 900 EVVLSSAREK IRAFQNVISD SEAEKEADDA ERDEDSECDD ADDDPDGDDV NIDVGDGKDP 960 LIGVKEQDGV PITTIVDSTK REKEKVDALT QSSDLTTSGK EAPKSSLGKP SSANTSSDSP 1020 VRASSEYHEV PPTDAEDKEI DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVSVANEG 1080 NFIRAVLEER LESANALKKQ MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA DVNQENATES 1140 TPTPFHNVDK HNDGNAGVVD NNNNEIIDHN SNAANASYER NGLGQDITAT PDTLSVQQYA 1200 YADKTRSQLR AYIGHRAEQL FVYRSLPLGL DRRRNRYWQF STSASPNDPG SGRIFFECRD 1260 GYWRVLDTEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKKSA VVEQSAGRYL 1320 KNGATEMIRA SYRSDFGSPS SNLSGVTSDS ATAYSDSFKI ELGRNDAEKT AISKRADVFI 1380 RWMWRECNDC KLTCAMEYGK KRCFELMHSC NYCYQIYLAE ERHCSSCHKN FKSIHNFSDH 1440 ASQCEDKLRT DHNWKMQTAD HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW TDGYRKSWGV 1500 KLHSTTSLEE IFQMLTLLEA AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL 1560 PWVPDTTAAI ALRMLDLDSA VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL 1620 DLFDGRWATG SGRRGRGRGS RGGSRGGRGR SRGGRVPRGI SISSRIGFKD ENEASRKNTR 1680 RGRTRGRGRG RGRRTVRSRQ PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE 1740 WGLENRRPYI DGDENSSGSQ LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID 1800 DDVSEEEDED AEGDDDGEED DADRAVDDVD AEMDEDDDIG DDGEDGGDGV EANADEDEGG 1860 SSYSSEYSD

Sequence ? help Back to Top

Protein Sequence Length: 1869 aa Download sequence Send to blast

MDDGDGAAPA EGSAASTPPP APPAAAAAAA AAVSAGSTGA SGSGEKTVKR MMKSPYQLEV  60
LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR REEEAAAVPL  120
MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL SAPDIGRRYY  180
EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL PPGSFGAPIV  240
PEQQKQHVRS YDTKIYSRHD SKLLKASAFF PSVEHPFVPN SIAGKRKSMV GNLPPVHPHA  300
GSRAVHEYQF LPEQPSDRYE GASRSHEGAS RSHYYDTPVE ASNSRMSSHT PGSHLLRGSD  360
EAAPGYAFQG QMSGSGHLPQ SGRREVLPAV PTDYEMIQSN SDLNSVPVEG QYGISQVAGI  420
ENSLLPSERR AYHDEDGSRV DRKRKHNEEA KIAKEVEAHE RRIRKELEKQ DMMKRKREEQ  480
MRKEMERHDR ERRKEEERLL RERQREQERF LREQRREHER MEKFMQKQSR RAEKQRQKEE  540
LRKEKEAARQ KAANERATAR RIAREYMELV EDERLELMEL AAQSKGLPSM LSLDSDTLQQ  600
LDSFRGMLTP FPPEPVRLKE PFSIKPWTVS EDNVGNLLMM DKQIDLFDTL ASLHQVWKFS  660
ITFADVLGLS SVTFDEFVQS LHDYDSRLLG ELHIALLKSI IKDIEDVSRT PSVALAVNPA  720
GGHPQIVEGA YAWGFNIRSW QRHLNVLTWP EILRQFALSA GFGPQLKKRN AEDVYYRDDN  780
EGHDGQDVIS TLRNGSAAVH AAALMKERGY THRRRSRHRL TPGTVKFAAF HVLSLEGSKG  840
LTILEVAERI QKSGLRDLTT SKTPEASIAA ALSRDTKLFE RTAPSTYCVK SPYRKDPADS  900
EVVLSSAREK IRAFQNVISD SEAEKEADDA ERDEDSECDD ADDDPDGDDV NIDVGDGKDP  960
LIGVKEQDGV PITTIVDSTK REKEKVDALT QSSDLTTSGK EAPKSSLGKP SSANTSSDSP  1020
VRASSEYHEV PPTDAEDKEI DESNQGESWV QGLAEGDYCD LSVEERLNAL VALVSVANEG  1080
NFIRAVLEER LESANALKKQ MLAEAQLDKR RSKEEFAGRV QYNSNMNLKA DVNQENATES  1140
TPTPFHNVDK HNDGNAGVVD NNNNEIIDHN SNAANASYER NGLGQDITAT PDTLSVQQYA  1200
YADKTRSQLR AYIGHRAEQL FVYRSLPLGL DRRRNRYWQF STSASPNDPG SGRIFFECRD  1260
GYWRVLDTEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKKSA VVEQSAGRYL  1320
KNGATEMIRA SYRSDFGSPS SNLSGVTSDS ATAYSDSFKI ELGRNDAEKT AISKRADVFI  1380
RWMWRECNDC KLTCAMEYGK KRCFELMHSC NYCYQIYLAE ERHCSSCHKN FKSIHNFSDH  1440
ASQCEDKLRT DHNWKMQTAD HSVPIGVRLL KLQLSTIEAS IPPEAIQPFW TDGYRKSWGV  1500
KLHSTTSLEE IFQMLTLLEA AIKRDHLSSE FETTSELLNL NTQDNPSQNH VGLSGSAAVL  1560
PWVPDTTAAI ALRMLDLDSA VSYMQNQKME RNGGDFMKPP SRFVAVKNAQ ELDPLETTGL  1620
DLFDGRWATG SGRRGRGRGS RGGSRGGRGR SRGGRVPRGI SISSRIGFKD ENEASRKNTR  1680
RGRTRGRGRG RGRRTVRSRQ PSEGKGRSIP KENLLGSFSM LSNAKAATVE ESPRSSGADE  1740
WGLENRRPYI DGDENSSGSQ LDQSEDNEEN GQPMDEEYDE QVPDYSRGYS GGSRPHGMID  1800
DDVSEEEDED AEGDDDGEED DADRAVDDVD AEMDEDDDIG DDGEDGGDGV EANADEDEGG  1860
SSYSSEYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1682	1692	RTRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0D9YCZ5	0.0	A0A0D9YCZ5_9ORYZ; Uncharacterized protein
STRING	OGLUM01G29920.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator