PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G30020.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 132aa    MW: 13439.9 Da    PI: 8.4952
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G30020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof36.97.8e-1279100526
           zf-Dof   5 alkcprCdstntkfCyynnysl 26 
                       l+cprC s++tkfCy+nny+ 
  OGLUM01G30020.1  79 PLPCPRCGSRETKFCYFNNYND 100
                      689*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-77899IPR003851Zinc finger, Dof-type
PfamPF027014.9E-979100IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MANLPSTAAA DASGFKLFGK VIQPDGQRGV EESAAAQAPP HPHPPAPPVM EAAAAGTSQT  60
LQAAGGGGGG GGGGGGGEPL PCPRCGSRET KFCYFNNYND SFGGQMDEAS NERDKKRKFG  120
NLGAFKIGRQ FK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032231e-134AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBankAP0032641e-134AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBankAP0149571e-134AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619286.12e-25dof zinc finger protein 5-like
TrEMBLA0A0D9YD102e-89A0A0D9YD10_9ORYZ; Uncharacterized protein
STRINGOGLUM01G30020.13e-90(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147161620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47655.11e-08Dof family protein