PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G31260.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family RAV
Protein Properties Length: 396aa    MW: 41534.6 Da    PI: 9.1396
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G31260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.3e-1279127155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s++kGV   + +grW A+I++      r +r++lg+f  +++Aa+a++ a+++++g
  OGLUM01G31260.1  79 SKFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEDDAARAYDVAAQRFRG 127
                      79****9888.8*********......44**********99*************98 PP
2B397.68e-31215307186
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++ 
  OGLUM01G31260.1 215 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDDAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSA 307
                      89*******************************5556799*************************************************9653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.25E-1679135IPR016177DNA-binding domain
CDDcd000188.31E-2379135No hitNo description
PfamPF008471.4E-779127IPR001471AP2/ERF domain
PROSITE profilePS5103219.5280135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1980135IPR001471AP2/ERF domain
SMARTSM003803.0E-2680141IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.4E-38211309IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-29213318No hitNo description
SuperFamilySSF1019365.62E-30213308IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-21215323IPR003340B3 DNA binding domain
PROSITE profilePS5086313.634215326IPR003340B3 DNA binding domain
PfamPF023628.3E-28215307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG  60
RVCGGGGGAG GAGGKLPSSK FKGVVPQPNG RWGAQIYERH QRVWLGTFAG EDDAARAYDV  120
AAQRFRGRDA VTNFRPLAEA DPDAAAELRF LATRSKAEVV DMLRKHTYFD ELAQSKRTFA  180
ASTPSAATTT ASLSNGHLSS PRSPFAPAAA RDHLFDKTVT PSDVGKLNRL VIPKQHAEKH  240
FPLQLPSAGG ESKGVLLNFE DDAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLHAGDV  300
VGFYRSAASA GDDGKLFIDC KLVRSTGAAL ASPADQPAPS PVKAVRLFGV DLLTAPTPAP  360
APVEQMAGCK RARDLAATTP PQAAAFKKQC IELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-4921432113115DNA-binding protein RAV1
5os9_A8e-492093192109B3 domain-containing transcription factor NGA1
5os9_B8e-492093192109B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866GGRVCGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419840.0AK241984.1 Oryza sativa Japonica Group cDNA, clone: J075097P17, full insert sequence.
GenBankAP0034500.0AP003450.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034C09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622542.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A0D9YDI30.0A0A0D9YDI3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G31260.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-105related to ABI3/VP1 2