PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G32190.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 304aa    MW: 33011.4 Da    PI: 9.5625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G32190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l ++v ++G+g W+tI +          R+  ++k++w+++
  OGLUM01G32190.1  5 KQKWTSEEEEALRRGVLKHGPGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                     79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.498160IPR017930Myb domain
SuperFamilySSF466899.72E-16258IPR009057Homeodomain-like
SMARTSM007175.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-14556IPR009057Homeodomain-like
PfamPF002491.4E-8556IPR001005SANT/Myb domain
CDDcd116607.87E-21656No hitNo description
SMARTSM005265.7E-898175IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.839112180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.6E-10118186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.41E-11118186IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.9E-6118172IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGPGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKLK VPRIKGPSSS TSPSSQTPLL VLPPNKVAEA SPSADPEKSS QDVKIPNSMV  120
IEALCEIGDP NGSDIDAICH YIEQRHEVQA NFRRLLTAKL RRLIAAKKIE KIDRSYRITE  180
SYAAKVSQAN KSPSPKKDPA KPLKASQNLG SFAGTSPALE AAAAAAMKVA DAEAKSHLAN  240
EHMTEAERIF KLAEETESLV TLATEIYERC SRGEILTIMQ VAQSNFEFQS VSGNGSGTGS  300
TVLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4957970.0AJ495797.1 Oryza sativa Japonica Group mRNA for MYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622157.10.0single myb histone 4 isoform X2
SwissprotQ6WLH41e-109SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0D3ET410.0A0A0D3ET41_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YDV90.0A0A0D9YDV9_9ORYZ; Uncharacterized protein
TrEMBLQ8GUA00.0Q8GUA0_ORYSJ; MYB28 protein
STRINGOGLUM01G32190.10.0(Oryza glumipatula)
STRINGOS01T0708000-000.0(Oryza sativa)
STRINGOBART01G28260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-47MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]