PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G35450.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 488aa    MW: 51286.1 Da    PI: 7.3697
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G35450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.64.7e-34168276189
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg... 88 
                      aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el++    +   +  + a++++ +a ++  +   
  OGLUM01G35450.1 168 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRaeaP---PPPAAASTEQPEATEQATStsy 258
                      689**************************************************************5441...3222111222111111111223 PP

              TCP  89 .................k 89 
                                       +
  OGLUM01G35450.1 259 gfgnttggtmtsaasaaA 276
                      344445555544433330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-31170287IPR005333Transcription factor, TCP
PROSITE profilePS5136932.971171229IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGIGADGGGG GCTHQDAAEP RKQQDERRRP ARSRSAEAEA AAAAAAAGKL TTEANYTSKW  60
RRELKLEEDK NQLSKGLDPW TSNPTASAST LHYLLQEKER AQQAHEQLQI YQQQQGFGSF  120
LQHRIRQPAS RGPGGGGGGG DGGGSSGEST PVDALATAFG AGRIVRSAAG RKDRHSKVCT  180
ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR PSKAVDWLMR NAKAAIDELP DRAEAPPPPA  240
AASTEQPEAT EQATSTSYGF GNTTGGTMTS AASAAAGSFL PHSLGADRVS DSVKSLFPSS  300
STASGTASAG HDEYRGSPPD LLSRTTSNQQ PQELCLTLQS NQHQIFSHVS SNHHGMISSA  360
GVPGWPDHSQ RMQAWHAPEN STGDGRGGGN GDGYMFAMPS RQGLDQSQLF SHGEPLQSSG  420
RGWASARAWL DPLAVAAIHH QPSTMAAGQV GFGHLVGGAG GGGGFMGFLA PAAQRLEGEE  480
EHGSEVIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-20176230155Putative transcription factor PCF6
5zkt_B6e-20176230155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718070.0AB071807.1 Oryza sativa Japonica Group mRNA for transcription factor PCF7, partial cds.
GenBankAP0032680.0AP003268.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0503C12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639296.10.0transcription factor PCF7
SwissprotQ8LT050.0PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A0D9YF420.0A0A0D9YF42_9ORYZ; Uncharacterized protein
STRINGOGLUM01G35450.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-37TCP family protein