PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G36730.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 609aa    MW: 64807.3 Da    PI: 7.6145
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G36730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.71.9e-333644791100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                      +C aCk+lrr+C+++Cv+ap+f                 ++ +++fa+vh++FGasnv kll+++p   r+da+++++yeA+ar+ dPvyG+vg
  OGLUM01G36730.1 364 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 457
                      7*********************************998555559*************************************************** PP

           DUF260  79 vilklqqqleqlkaelallkee 100
                      +il+lq+q++ l+ +l++l+++
  OGLUM01G36730.1 458 TILALQHQVSLLQGQLSVLESQ 479
                      ****************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.170.270.102.0E-3048248No hitNo description
SuperFamilySSF821991.64E-2849228No hitNo description
PfamPF050337.4E-852171IPR007728Pre-SET domain
PROSITE profilePS5089120.628363480IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-37364477IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MRNSATPGAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI  60
PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG  120
CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPLCGN RRTQLGVTVR  180
LRVVRHREKG WGLHAAEVLR RRQFVCEYAG ELLTTEEARR RQGLYDELAS VEISSKEKSS  240
PSVMVMLDLG RMACRAFALG MHSPLQESGG DEDESFDKED SWREWRTQQK NNLVPLQSFI  300
QSTLPFPLSL AFVSSVQQPQ LMPMPPLPMP HPPGSSKRRG AVERPASGAG LQAEEASSAG  360
PGAPCGACKF LRRRCVPGCV FAPHFSGCGG SGVGAGVGGR GRERGAAEFA AVHRVFGASN  420
VAKLLSRVPA ALRRDAARTV CYEAQARIAD PVYGSVGTIL ALQHQVSLLQ GQLSVLESQL  480
FNLRVALASA HPDTPPQHFV VLQPAHSAAS TPNQVVVNYD DLPHAVDFMD AEPAALRGLE  540
SLQLSQPLQR EEDEGHRDMN LFSDSVGQRQ LGFGSHTIKV LEVLIDEISW AQSKSSAGDQ  600
RKALLRREG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-303574814112LOB family transfactor Ramosa2.1
5ly0_B4e-303574814112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9YFK00.0A0A0D9YFK0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G36730.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-22LOB domain-containing protein 20