PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G36730.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 617aa    MW: 65647.3 Da    PI: 7.6145
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G36730.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.61.9e-333724871100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                      +C aCk+lrr+C+++Cv+ap+f                 ++ +++fa+vh++FGasnv kll+++p   r+da+++++yeA+ar+ dPvyG+vg
  OGLUM01G36730.2 372 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 465
                      7*********************************998555559*************************************************** PP

           DUF260  79 vilklqqqleqlkaelallkee 100
                      +il+lq+q++ l+ +l++l+++
  OGLUM01G36730.2 466 TILALQHQVSLLQGQLSVLESQ 487
                      ****************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.170.270.102.0E-3048248No hitNo description
SuperFamilySSF821991.8E-2849228No hitNo description
PfamPF050337.6E-852171IPR007728Pre-SET domain
PROSITE profilePS5089120.628371488IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-37372485IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MRNSATPGAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI  60
PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG  120
CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPLCGN RRTQLGVTVR  180
LRVVRHREKG WGLHAAEVLR RRQFVCEYAG ELLTTEEARR RQGLYDELAS VEISSKEKSS  240
PSVMVMLDLG RMACRAFALG MHSPLQESGG DEDESFDKED SWREWRTQQK NNLVPLQSFI  300
QSTLPFPLSL AFVSSVQQPQ LMPMPPLPMP HVPFALALQP PGSSKRRGAV ERPASGAGLQ  360
AEEASSAGPG APCGACKFLR RRCVPGCVFA PHFSGCGGSG VGAGVGGRGR ERGAAEFAAV  420
HRVFGASNVA KLLSRVPAAL RRDAARTVCY EAQARIADPV YGSVGTILAL QHQVSLLQGQ  480
LSVLESQLFN LRVALASAHP DTPPQHFVVL QPAHSAASTP NQVVVNYDDL PHAVDFMDAE  540
PAALRGLESL QLSQPLQREE DEGHRDMNLF SDSVGQRQLG FGSHTIKVLE VLIDEISWAQ  600
SKSSAGDQRK ALLRREG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-303654894112LOB family transfactor Ramosa2.1
5ly0_B4e-303654894112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9YFK10.0A0A0D9YFK1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G36730.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1125044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-22LOB domain-containing protein 20