PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G37170.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 415aa MW: 45155 Da PI: 10.5032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G37170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	337	357	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F + +L++H++++ OGLUM01G37170.1 337 RCSQCGKEF-KPQELHSHMQSC 357 6******.*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	2.7E-34	21	163	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MEKGGGSQKG GGGGGGEARR INVVYFLSRG GRTDHPHLFR VNHHRAGVRL RDVKRWLSEL 60 RGQDMADNFS WSYKRKYKAG YIWQDLMMDD DLITPISDNE YVLKGCDVRR ATESPKEKSS 120 SLAEEPKKLN GQEVKVACDQ KQVEEVTTTM APDSDERSPK KPPPADQDSP VGEGGEPASR 180 STAPLKKDLP RGLREERKKQ QREVVKVVSK AVVVPAPAPE QKVKGAASGR ISSHPPPAVG 240 SARRMHLAQL LHNLLTCGAA DADDTALRPV LRHGAAGADD DGGDWPRTPV CPGIDGCGLR 300 VGKKVKVRRG GKDKAKPKRD GGKRDGGDSH KPASLPRCSQ CGKEFKPQEL HSHMQSCRVF 360 REKMRSSTSS RVSVDRGRTS AAARTEHRRT RSKGAAAAPG DTSDRPSAVL LLRDS

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MEKGGGSQKG GGGGGGEARR INVVYFLSRG GRTDHPHLFR VNHHRAGVRL RDVKRWLSEL  60
RGQDMADNFS WSYKRKYKAG YIWQDLMMDD DLITPISDNE YVLKGCDVRR ATESPKEKSS  120
SLAEEPKKLN GQEVKVACDQ KQVEEVTTTM APDSDERSPK KPPPADQDSP VGEGGEPASR  180
STAPLKKDLP RGLREERKKQ QREVVKVVSK AVVVPAPAPE QKVKGAASGR ISSHPPPAVG  240
SARRMHLAQL LHNLLTCGAA DADDTALRPV LRHGAAGADD DGGDWPRTPV CPGIDGCGLR  300
VGKKVKVRRG GKDKAKPKRD GGKRDGGDSH KPASLPRCSQ CGKEFKPQEL HSHMQSCRVF  360
REKMRSSTSS RVSVDRGRTS AAARTEHRRT RSKGAAAAPG DTSDRPSAVL LLRDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241481	0.0	AK241481.1 Oryza sativa Japonica Group cDNA, clone: J065166E16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633111.1	0.0	protein UPSTREAM OF FLC
Refseq	XP_025877314.1	0.0	protein UPSTREAM OF FLC
TrEMBL	A0A0D9YFR7	0.0	A0A0D9YFR7_9ORYZ; Uncharacterized protein
STRING	OGLUM01G37170.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10794	12	13