PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G40820.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 923aa    MW: 101617 Da    PI: 6.9994
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G40820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3881.1e-1185479162374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+ v+++d + a++lL++++++a  +gd  qRla++f+++L+arla+++s++yk  + ++ +    +++l+a++l+  ++P+ k+sh
  OGLUM01G40820.1 547 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSQIYKNYTITRLP---CTDVLKAYQLYLAACPFKKISH 637
                      789************************************************************999999...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                        aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef++ +a+r+e
  OGLUM01G40820.1 638 YFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEFQA-IASRFE 730
                      ***************************************************************************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++++e+L+++++E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+v+++   + ++n++ F++rf eal +ysa+fd+le+++p+++e+
  OGLUM01G40820.1 731 AVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHVFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPKDNEQ 824
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r  +E +l++re+ nv++ceg er er et+++W+ r ++aGFk++pl+++++k a+  +r +++d + ++e++ +l++gWk+r L+++S W+
  OGLUM01G40820.1 825 RLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRAGFKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRILFALSTWK 916
                      ****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.515520897IPR005202Transcription factor GRAS
PfamPF035143.7E-116547916IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MPNLICLQLH AAITPIWLES PSCSIRQTVK VSTTTTNVPV INNPVYGHGP PPAHSSRPRR  60
PLALVPRTFP TAQPLSVNPP ASHLRGRGPG AGKVSTLRLR ERIASVLIVG ERLGPGQPAP  120
LENTGPPPFP SPLGSLISPF VSLVSLPPQQ MVMDAGVHDV CTMLPGSKRD AHLPLPIYPQ  180
IAAANGFATA EEFDPLLFLS PDAVCGGGGG DYLNIVSAQP ISAASTNGAS PPRDVSVSAS  240
AASSAAAQHD DSEAFSDIVL GYINRMLMAE DIDEKFEHYP VNADDLLAAE KPFLEILADQ  300
SPYSGGSSVE SPDGSSAANS CNSLSPCNCS SSSDGLGAVP QTPVLEFPTA AFSQTPQLYG  360
DLIPTGGMVE SGGAWPYDPT EFYQLQTKPN QQALQFRRGF QEASKFLPDE SKLVIDVDKL  420
YSGDEGSRFL GEVRQEKKLV KVKTETSDVE SAGHRGKKHF YGDDLDAEEG RCSKHSAQGI  480
DTDHLVRDLM DKVLLCNGET CSKGVKELRE ALQHDVAKHS GGGHGKGSSH GKGRGKKQPK  540
KEVVDLETLL IHCAQSVATD DRRSATELLK QIRQHAHANG DGDQRLAHCF ANGLEARLAG  600
TGSQIYKNYT ITRLPCTDVL KAYQLYLAAC PFKKISHYFA NQTILNAVEK AKKVHIVDYG  660
IYYGFQWPCL IQRLSNRPGG PPKLRITGID TPQPGFRPAE RTEETGRYLS DYAQTFNVPF  720
EFQAIASRFE AVRMEDLHIE EDEVLIVNCM FKFKNLMDES VVAESPRNMA LKTIRKMNPH  780
VFIHGVVNGS YNAPFFVTRF REALFHYSAI FDMLETNIPK DNEQRLLIES ALFSREAINV  840
ISCEGLERME RPETYKQWQV RNQRAGFKQL PLNQDMMKRA REKVRCYHKD FIIDEDNRWL  900
LQGWKGRILF ALSTWKPDNR SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-505509168375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619299.10.0scarecrow-like protein 9 isoform X2
TrEMBLA0A0D9YH560.0A0A0D9YH56_9ORYZ; Uncharacterized protein
STRINGOGLUM01G40820.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-180GRAS family protein