PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G40860.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 208aa    MW: 22274.5 Da    PI: 7.9173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G40860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32359258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                      Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h
  OGLUM01G40860.1  3 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHHH 59
                     6*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.702162IPR003657WRKY domain
SMARTSM007741.1E-35261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-31260IPR003657WRKY domain
SuperFamilySSF1182909.81E-27261IPR003657WRKY domain
PfamPF031061.4E-26459IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MPADGYKWRK YGQKSIKNNP HPRSYYKCTS SRCSAKKHVE KSTDDPEMLI VTYEGSHHHG  60
PQPLFPPHIA QPPPPTSVVG FSAASGAGPP PSSPAAAARK RKNYVRAAFS PTTSEDDGDG  120
AGRLRPEWPQ DDGTSCDVAE LRRRGDAEHA APRRVATDRS CDDGGGGGST SASSSVARAD  180
AATALSSDSP PTIWSCLDWP WSQETLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-214591974Probable WRKY transcription factor 4
2lex_A2e-214591974Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-149WRKY transcription factor WRKY28
TrEMBLA0A0D9YH601e-150A0A0D9YH60_9ORYZ; Uncharacterized protein
STRINGOGLUM01G40860.11e-150(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.19e-25WRKY DNA-binding protein 49