PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G41620.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 804aa MW: 88305 Da PI: 8.3721

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G41620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.7e-17	524	566	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+e+d l++a+k +G++ W+ Iar+++ gR+++ +k++w+ OGLUM01G41620.1 524 KDVWTEEDDRMLIEAHKTYGNR-WSVIARCLP-GRSENAVKNHWN 566 578*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52540	2.94E-31	132	375	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	2.9E-14	140	306	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd00009	6.34E-7	145	300	No hit	No description
Pfam	PF13401	1.2E-17	161	277	IPR003593	AAA+ ATPase domain
Gene3D	G3DSA:1.10.8.60	2.1E-13	309	380	No hit	No description
Gene3D	G3DSA:1.10.10.10	8.4E-17	427	524	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.17E-15	427	527	IPR011991	Winged helix-turn-helix DNA-binding domain
CDD	cd08768	2.46E-12	435	518	IPR015163	Cdc6, C-terminal
Pfam	PF09079	2.4E-16	442	521	IPR015163	Cdc6, C-terminal
SMART	SM01074	3.7E-8	442	522	IPR015163	Cdc6, C-terminal
PROSITE profile	PS51294	20.463	519	573	IPR017930	Myb domain
SuperFamily	SSF46689	2.23E-15	522	573	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-18	523	571	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-15	524	566	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-17	525	570	IPR009057	Homeodomain-like
CDD	cd00167	2.79E-14	527	569	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MPTLRSATAS ASTAGTASPT AIATPRSAKR RLTSPRRAAG SPDASQFTSP HKSPNVGIVG 60 TPKLLSASPR SSRKRLYGDF VAAEKPKWNP RGESPESHFS RAQSSDWDLT KEFICSADPA 120 QMQVVKEALH VATVPSCGLV CRDHEQSRVL EFCKGCVEQE RAGSLYVCGC PGTGKTLSIN 180 KVKESVARWA DETGMETPDA LSINCTSLAK THEIFSKILA KFQTRKKATC KLSPLQQLQT 240 MFSHKESAPR RMLLVVVDEM DYLITRDRAV LHDLFMLTTY QFSRCILIGI ANAIDLADRF 300 LPKLESLNCK PLVVTFRAYS KDQISDIIKH RLKVLEYDVF EPLALEFCAR KVAAASGDMR 360 KALGVCRSAV EVFEARLQES SDQEFGLVTC ITNKVVPVKE ITFVHVYIDV TFDHMDIALS 420 KAFKSPVVDS ILCLPQHQQM VLCALANTFH HCKKKATTLG ELNKSYIEIC RSTQVPAVGM 480 LEFSNMCMVL SDQGFMKLGQ SKEDKLRRVM LQINSSDITF AFKKDVWTEE DDRMLIEAHK 540 TYGNRWSVIA RCLPGRSENA VKNHWNATKR SLKSKRRMKK KSVQVVNSPP GQLSPLEEYI 600 RSQYPSAVET TPPPPAVPAP PSDVIVHGAG SVSAGPTVAT QEPTGTNPSE MGIYLGLGNP 660 AGPTTQQLAA MNLNMSLAPD LNAYNDQREG YYLPFVPQGN LHYGMHVPAP PVQQQQQQGI 720 SVDQGLHSSC LSLYHPFPGT HPVSLDFGCQ SSNHANAGGY YSEAGPSSGS GSGDPDDVDV 780 IQMASRQFLM PSEAEVTLDL TRFK

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MPTLRSATAS ASTAGTASPT AIATPRSAKR RLTSPRRAAG SPDASQFTSP HKSPNVGIVG  60
TPKLLSASPR SSRKRLYGDF VAAEKPKWNP RGESPESHFS RAQSSDWDLT KEFICSADPA  120
QMQVVKEALH VATVPSCGLV CRDHEQSRVL EFCKGCVEQE RAGSLYVCGC PGTGKTLSIN  180
KVKESVARWA DETGMETPDA LSINCTSLAK THEIFSKILA KFQTRKKATC KLSPLQQLQT  240
MFSHKESAPR RMLLVVVDEM DYLITRDRAV LHDLFMLTTY QFSRCILIGI ANAIDLADRF  300
LPKLESLNCK PLVVTFRAYS KDQISDIIKH RLKVLEYDVF EPLALEFCAR KVAAASGDMR  360
KALGVCRSAV EVFEARLQES SDQEFGLVTC ITNKVVPVKE ITFVHVYIDV TFDHMDIALS  420
KAFKSPVVDS ILCLPQHQQM VLCALANTFH HCKKKATTLG ELNKSYIEIC RSTQVPAVGM  480
LEFSNMCMVL SDQGFMKLGQ SKEDKLRRVM LQINSSDITF AFKKDVWTEE DDRMLIEAHK  540
TYGNRWSVIA RCLPGRSENA VKNHWNATKR SLKSKRRMKK KSVQVVNSPP GQLSPLEEYI  600
RSQYPSAVET TPPPPAVPAP PSDVIVHGAG SVSAGPTVAT QEPTGTNPSE MGIYLGLGNP  660
AGPTTQQLAA MNLNMSLAPD LNAYNDQREG YYLPFVPQGN LHYGMHVPAP PVQQQQQQGI  720
SVDQGLHSSC LSLYHPFPGT HPVSLDFGCQ SSNHANAGGY YSEAGPSSGS GSGDPDDVDV  780
IQMASRQFLM PSEAEVTLDL TRFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ujm_A	7e-37	114	525	140	522	Origin recognition complex subunit 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in the initiation of DNA replication. {ECO:0000250\|UniProtKB:O82387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107451	0.0	AK107451.1 Oryza sativa Japonica Group cDNA clone:002-128-C05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622249.1	0.0	cell division control protein 6 homolog isoform X1
Swissprot	Q5N897	0.0	CDC6_ORYSJ; Cell division control protein 6 homolog
TrEMBL	A0A0D9YHG6	0.0	A0A0D9YHG6_9ORYZ; Uncharacterized protein
STRING	OGLUM01G41620.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	3e-16	myb domain protein 118

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]