PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G45030.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 270aa    MW: 29735 Da    PI: 8.009
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G45030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.63.8e-852269103374
             GRAS 103 leavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                      lea+ege+ vH++D++++     G QW  Ll+ La+R++g+p ++R+Tgvg+    + ++++++g+ L+ +Ae lg+ +ef+  + + le+l++
  OGLUM01G45030.1   2 LEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTMRAIGRELQAYAEGLGMYLEFRG-INRGLESLHI 90 
                      8*************98762222567*************77666*********....9**************************.799******* PP

             GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                      ++L v+ +Ea+a+n+vl+lh++++es    +   +vL+++++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr +  r+ v
  OGLUM01G45030.1  91 DDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARV 181
                      ***********************88877777...8*********************************************************** PP

             GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++    ++a+  l + + + gy+v ee+g+lvlgWk++p++++S+W+
  OGLUM01G45030.1 182 EQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGGGYTVAEEKGCLVLGWKGKPVIAASCWK 269
                      ********************************************754..467777777776999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.7271250IPR005202Transcription factor GRAS
PfamPF035141.3E-822269IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLEAFEGESN VHVVDLGMTL GLDRGHQWRG LLDGLAARAS GKPARVRVTG VGARMDTMRA  60
IGRELQAYAE GLGMYLEFRG INRGLESLHI DDLGVDADEA VAINSVLELH SVVKESRGAL  120
NSVLQTIRKL SPRAFVLVEQ DAGHNGPFFL GRFMEALHYY AALFDALDAA LPRYDARRAR  180
VEQFHFGAEI RNVVGCEGAA RVERHERADQ WRRRMSRAGF QSVPIKMAAK AREWLDENAG  240
GGGYTVAEEK GCLVLGWKGK PVIAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-463268122378Protein SCARECROW
5b3h_A5e-463268121377Protein SCARECROW
5b3h_D5e-463268121377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037910.0AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067570.0AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.10.0DELLA protein RGL1
TrEMBLA0A0D9YIT10.0A0A0D9YIT1_9ORYZ; Uncharacterized protein
TrEMBLQ8RZ730.0Q8RZ73_ORYSJ; Gibberellin response modulator-like protein
STRINGOGLUM01G45030.10.0(Oryza glumipatula)
STRINGOBART01G40830.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-50RGA-like 1