PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G45850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 694aa    MW: 73921.4 Da    PI: 9.31
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G45850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09408455455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  OGLUM01G45850.1 408 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 455
                      79************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.99E-10402459No hitNo description
SuperFamilySSF474592.36E-16402473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256404454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16406472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6408455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10410460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MTEILSPTKT ILLADCSSKK AHAFNPRKGG GCKDLQQQQQ QLVLLFHSFT VPPLFLALSR  60
TRKAPAFTLS PLAFPHPRRS GIWWLLASRV SFAGLGRSWE LGNSGGLVGF RGELRQIFEM  120
NCGPPDQLPP ATAPSCFLNL NWDQSMDAAA GGHLDPALSS MVSSPASNST GALHGISPQP  180
HYGGGTPLSS PPKLNLSMMG QFHHYAAPPQ VGGGGGGGGG GGLPILENLM PMGHLDQFLA  240
DPGFAERAAR LSGFDARGGG GGGGYGGAGP AQFGLPDAGA AGASKEMELG NTRDESSVSD  300
PAPGGAEIPP KGASDGNARK RKASGKGKGK DSPMSTSAAK EDSSGKRCKS TEESNAAAEE  360
NSGKGKAAQS NSENGGGKKQ GKDSSSKPPE PPKDYIHVRA RRGEATDSHS LAERVRREKI  420
SQRMKLLQDL VPGCNKVVGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNNLPNL  480
LAKDMHQSCS PLQSSHFPLE TSGAPLPYIN QPQQGNPLGC GLTNGMDNQG SMHPLDPAFC  540
RPMGSHHPFL NGVSDAASQV GAFWQDDLQS VVQMDMGQGQ EIATSSNSYN VLEGSENKLN  600
FRICLSQKRV HMKIQDYLTA SPADFFSTIS MGIDNVMRYK KETALQQMRR SHGKKRGAKG  660
ETGTVHIHSH KQSIIKPCLR LLADNFYSRR DIQS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621926.10.0transcription factor bHLH77 isoform X1
TrEMBLA0A0D9YJ490.0A0A0D9YJ49_9ORYZ; Uncharacterized protein
STRINGOGLUM01G45850.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-57bHLH family protein