PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G46010.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 437aa    MW: 47631.9 Da    PI: 8.6646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G46010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-1079104227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C +++rtG C++G +C+F+H++
  OGLUM01G46010.1  79 GEPDCTYYLRTGLCRFGMSCRFNHPQ 104
                      6899********************97 PP
2zf-CCCH391.4e-12124149227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tGtCk+G++CkF+H++
  OGLUM01G46010.1 124 GQPECQYYLKTGTCKFGPTCKFHHPR 149
                      5799********************96 PP
3zf-CCCH37.25.1e-12171195327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C ++++tG+CkyG++CkF+H++
  OGLUM01G46010.1 171 EKECAYYLKTGQCKYGNTCKFHHPE 195
                      679********************96 PP
4zf-CCCH39.31.1e-12332357227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG Ck+G+ CkF+H++
  OGLUM01G46010.1 332 DQPECQYYMKTGDCKFGAVCKFHHPR 357
                      689*********************96 PP
5zf-CCCH41.81.8e-13377402126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++elC+f++r+G+Ck+G++CkF H+
  OGLUM01G46010.1 377 PGEELCKFYSRYGICKFGANCKFDHP 402
                      689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.35277105IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-577104IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-879104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-582105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-483104IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5122149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986122150IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10124149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5128150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868168196IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5168195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6169195IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9171195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5174194IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5330357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023330358IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9332357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5333357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4336356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413376404IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7376403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6378403IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10378402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5380401IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPSQLPATAA ATDEPSHDPA ALYGEGMWQQ  60
MTMSGSGAMQ PGPYPERSGE PDCTYYLRTG LCRFGMSCRF NHPQDRNLAI ASARMKGEYP  120
ERMGQPECQY YLKTGTCKFG PTCKFHHPRE KAGIAGRVQL NTLGYPLRPS EKECAYYLKT  180
GQCKYGNTCK FHHPELFNAM ASSRGSPIYP SVHSSATAGP PSYTGTMASW AFPRGSFIPS  240
PRWQNPSNYA PMIVPQGLVQ VPSWNSYTGQ MMPVSSSESR LQSPGAQQTY GTSQQVDASA  300
GNQGMLSPYR SSSYPVPQYA LQRENVFPER PDQPECQYYM KTGDCKFGAV CKFHHPRVRS  360
MPTPDCVLSP VGLPLRPGEE LCKFYSRYGI CKFGANCKFD HPTMAPPMGV YAYGSASTNV  420
PMVRRLLQSP SASAYTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0989480.0AK098948.1 Oryza sativa Japonica Group cDNA clone:J013050D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622340.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A0D9YJ740.0A0A0D9YJ74_9ORYZ; Uncharacterized protein
STRINGOGLUM01G46010.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]