PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G46490.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CAMTA

Protein Properties

Length: 847aa MW: 96106.2 Da PI: 7.1336

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G46490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	174.8	1.2e-54	12	130	1	118
CG-1 1 llke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 l++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+t OGLUM01G46490.1 12 LHQEvKSRWLKPKEVLQILQNHDRFIITHKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNST 105 567889************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+L+ ++++iv+vhy++v+ OGLUM01G46490.1 106 FQRRIYWMLDPAYDHIVFVHYRDVQ 130 ********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.932	9	135	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.6E-69	12	130	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-48	16	129	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.4E-5	314	399	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.4E-14	314	397	IPR014756	Immunoglobulin E-set
CDD	cd00102	0.0097	315	398	No hit	No description
CDD	cd00204	6.19E-11	489	611	No hit	No description
Pfam	PF13637	1.5E-9	521	573	No hit	No description
SuperFamily	SSF48403	1.21E-15	523	614	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.0E-16	524	614	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.255	524	584	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.9E-4	552	581	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.541	552	584	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	8.169	706	734	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MQQQQGFGTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR 60 YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH 120 IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE 180 EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT 240 VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLPFSST IDVLKNSDTW LEEDQIEAIL 300 HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVPAEIV 360 QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE 420 LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGTSERL 480 NRDTAVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL 540 NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS 600 AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRLVG RISDTSAHAQ SGSDDQLALK 660 ESLGAMRYAV QAAGRIQTAF RRNNKQVFRI EKNFRCWKKR KEFLKIRKNV IKIQARVRAH 720 QQHNKYKELL RSVGILEKVM LRWYRKGVGL RGFHPGAIAM PIDEEDEDDI AKVFRKQRVE 780 TALNEAVSRV SSIIDSPVAR QQYRRMLEMH KQNKDDDEKV EVSPASHVYG SGSHHMCWLS 840 HNNKAMH

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MQQQQGFGTH RLHQEVKSRW LKPKEVLQIL QNHDRFIITH KTPHKPPSGA WFLFNRRVLR  60
YFRNDGYEWR KKKNGKTIAE AHERLKVDNV DALNCYYAHA DKNSTFQRRI YWMLDPAYDH  120
IVFVHYRDVQ EGSISVSALN DSSTSNQNGS GSRAEAQSSP GLTSELFAPC LNSCSPGSAE  180
EVSSQIMAIN NETNSVSQPD WVQHCNQAAL RKLKVQLSLE DREDHDVDAK DIPSNSEPIT  240
VYGIQNEEPG TCRNLADVFS GLEFSKENHP EETGLPFSST IDVLKNSDTW LEEDQIEAIL  300
HSASMIVTEN QWFNIREVSP EWSYCSESTK VIIAGDFLRD PSHGSWAIVF GDVKVPAEIV  360
QQGVIRCHTP CLDARKVTMY LIDENEKACS EARQFEFHNK PTKSVVCENR KPCREVHESE  420
LHQRPTESNN ELLLLFNYAQ LLFDGHVSEQ FLKFGLPFPN LECGLQVSPS EIMKGTSERL  480
NRDTAVNCVM EVLLNNKFEE WLFSKYEQNS EGNHFLPRQY HGVIHTIAAL GYNWALKLLL  540
NSGVLVNYRD ANGWTALHWA ARFGREETVV LLLDAGAAAG ALSDPTAQDP AAKTPASVAS  600
AYGFKGLSAY LSEAELIAHL HSLESKENGS SGDQISRLVG RISDTSAHAQ SGSDDQLALK  660
ESLGAMRYAV QAAGRIQTAF RRNNKQVFRI EKNFRCWKKR KEFLKIRKNV IKIQARVRAH  720
QQHNKYKELL RSVGILEKVM LRWYRKGVGL RGFHPGAIAM PIDEEDEDDI AKVFRKQRVE  780
TALNEAVSRV SSIIDSPVAR QQYRRMLEMH KQNKDDDEKV EVSPASHVYG SGSHHMCWLS  840
HNNKAMH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068932	0.0	AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
GenBank	AK122110	0.0	AK122110.1 Oryza sativa Japonica Group cDNA clone:J033127H20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649554.1	0.0	calmodulin-binding transcription activator 4 isoform X1
TrEMBL	A0A0D9YJD2	0.0	A0A0D9YJD2_9ORYZ; Uncharacterized protein
STRING	OGLUM01G46490.2	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	1e-104	calmodulin binding;transcription regulators