PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G46870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 427aa    MW: 44507.2 Da    PI: 6.322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G46870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11233275754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  OGLUM01G46870.1 233 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 275
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16229292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9232275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-16233288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-12233279No hitNo description
CDDcd048731.46E-4347407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASLLGLLFS SLLFSERCET RRRARSGGEV AMDEAEAAAK MDELAGGGGG GGGGDWSYLA  60
ADALAAASFT AFPFHHHHHH HRDVLSVSTP SSLLLNMDAA TAAAMFDFQA AFPSSSVPPP  120
PPTTTAALPP FHDFASSNPF DDAPPPFLAP PGQKLGFLGP PGGAFGGGMG WDDDDEIEQS  180
VDASSMGVSA SLENAAPVAA GGGGGGGGGG GGGGGGGGGG RGKKKGMPAK NLMAERRRRK  240
KLNDRLYMLR SVVPKISKMD RASILGDAIE YLKELLQRIN DLHNELESAP SSSLTGPSSA  300
SFHPSTPTLQ TFPGRVKEEL CPTSFPSPSG QQATVEVRMR EGHAVNIHMF CARRPGILMS  360
TLRALDSLGL GIEQAVISCF NGFAMDVFRA EQCRDGPGLG PEEIKTVLLH SAGLQNAMRT  420
DEMRLAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222240KKKGMPAKNLMAERRRRKK
2234241ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025940.0AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence.
GenBankHQ8588780.0HQ858878.1 Oryza sativa Japonica Group isolate UT1858 ABIVP1 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.10.0transcription factor ICE1
TrEMBLA0A0D9YJI40.0A0A0D9YJI4_9ORYZ; Uncharacterized protein
STRINGOGLUM01G46870.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-93bHLH family protein