PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G48010.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 150aa    MW: 16874.1 Da    PI: 6.7712
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G48010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.55.3e-101779465
              NAM  4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrd 65
                     G+ F+Pt++el+ ++L+++++g   +++ ++ e+d + + Pw+L +++  +e+ + y F  r 
  OGLUM01G48010.1 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLARHGRREEGInYCFYVRG 79
                     999*********************9**999**************8665555554456665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-205122IPR003441NAC domain
PfamPF023652.6E-41795IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL  60
LARHGRREEG INYCFYVRGE MGQQRSTGWM MAEYEITDPR CYRRADDGEE DDFWVLCHVR  120
KSSRPSAAKI SPAKPARRRK PTAAADVRAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126091e-111CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641921.11e-83NAC domain-containing protein 48-like isoform X1
RefseqXP_015641928.11e-83NAC domain-containing protein 48-like isoform X2
TrEMBLA0A0D9YJY51e-106A0A0D9YJY5_9ORYZ; Uncharacterized protein
STRINGOGLUM01G48010.11e-107(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528