PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G49620.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 172aa MW: 19663.5 Da PI: 7.5485

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G49620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.8	6e-11	65	154	6	94
..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 6 tpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ ++++ +++ +f e++ g++ + ++ + + +s++++l+ r k++r +lt+GW++ +a+ +egD++ F++++ ++ lv+ OGLUM01G49620.1 65 VKRTLMTNAKMTFAVQFSERYinkyiGSP--IDDLMVSMAGTTQSYQMRLK-RSKDSRAMLTTGWNQLIDAKAFDEGDVCPFHFKEVDD-VLVL 154 55667788899999999999998765433..33344445567799999993.4444459************************876433.2444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-10	56	149	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.7E-10	57	154	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.7E-8	66	156	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MGDGNEVIDI SSDSDDGQYG PRTFSGFDKY CWYGNDVTLT KSMHLQIAHV AAVNLPKIPL 60 FVCTVKRTLM TNAKMTFAVQ FSERYINKYI GSPIDDLMVS MAGTTQSYQM RLKRSKDSRA 120 MLTTGWNQLI DAKAFDEGDV CPFHFKEVDD VLVLKITQLR HFFGMHYNYP KY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070845	1e-150	AK070845.1 Oryza sativa Japonica Group cDNA clone:J023070F17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	B7EIH2	3e-58	Y3643_ORYSJ; B3 domain-containing protein Os03g0164300
TrEMBL	A0A0D9YKK6	1e-127	A0A0D9YKK6_9ORYZ; Uncharacterized protein
STRING	OGLUM01G49620.1	1e-128	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19020	5	5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]