PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G49640.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 233aa MW: 23994 Da PI: 10.7618

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G49640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.5	1.4e-39	28	138	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ ++s + OGLUM01G49640.1 28 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNSTSNS-Ndlllp 120 789*************************************************************99999888755555555444444.358888 PP TCP 89 ...............kaaksaa 95 + ++ OGLUM01G49640.1 121 raapfilgkrlraadD----HT 138 7777777766533322....22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-33	34	128	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MTTRPDGGGG APDKQLVPAS NANGTALAVR KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST SSPSSLRSNS TSNSNDLLLP 120 RAAPFILGKR LRAADDHTTS PAPAPDATAP TQAFWALPAR ADFGQLWSFA AAPEMMVAAA 180 AAPAMPGEAS AARVGNYLPM AQGNLNLLAS FSGGPGGAGA TAATGRPEEE SAR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	0.0	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	0.0	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627477.1	1e-111	transcription factor TCP7
Swissprot	Q9FMX2	3e-76	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D9YKK8	1e-164	A0A0D9YKK8_9ORYZ; Uncharacterized protein
STRING	OGLUM01G49640.1	1e-165	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-44	TCP family protein