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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM02G01420.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | bHLH | ||||||||
| Protein Properties | Length: 557aa MW: 58561.6 Da PI: 4.4043 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 36.9 | 6.7e-12 | 294 | 337 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
e+Er+RR+++N + +Lr+l+P+ +K++ a+iL A++YI Lq
OGLUM02G01420.1 294 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 337
89*********************7.....7***************9887 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 1.20E-13 | 286 | 348 | No hit | No description |
| PROSITE profile | PS50888 | 15.37 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 8.64E-18 | 288 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.2E-15 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 294 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.4E-9 | 294 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009555 | Biological Process | pollen development | ||||
| GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 557 aa Download sequence Send to blast |
MGRGDHLLMK NSNAAAAAAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG 60 FCCSSELEAQ VSALLDLPSS IPLDSSSLGM HAQALLSNQS IWQSSSEEEE EADGGGGAKT 120 RLLVPVAGGL VELFASRYMA EEQQMAELVM AQCGGGGGGA GDDGGGQAWP PPETPSFQWD 180 GGADAQRLMY GGSSLNLFDA AAADDDPFLG GGGGGGGDAV GDAAAAAGAW PYAGMAVSEP 240 SVAVAQEQMQ HAAGGGVAES GSEGRELHGG DPEDDGDGEG RSGGAKRQQC KNLEAERKRR 300 KKLNGHLYKL RSLVPNITKM DRASILGDAI DYIVGLQKQV KELQDELEDN HVHHKPPDVL 360 IDHPPPASLV GLDNDDASPP NSHQQQPPLA VAGSSSRRSN KDPAMTDDKV GGGGGGGHRM 420 EPQLEVRQVQ GNELFVQVLW EHKPGGFVRL MDAMNALGLE VINVNVTTYK TLVLNVFRVM 480 VRDNEVAVQA DRVRDSLLEV TRETYPGVWP SPQEEDDAKF DGGDGGQAAA AAAAGGEHYH 540 DEVGGGYHQH LHYLAFD |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 295 | 302 | ERKRRKKL |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK119580 | 0.0 | AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015625730.1 | 0.0 | transcription factor TDR | ||||
| Refseq | XP_025878930.1 | 0.0 | transcription factor TDR | ||||
| Refseq | XP_025878931.1 | 0.0 | transcription factor TDR | ||||
| Swissprot | Q6YUS3 | 0.0 | TDR_ORYSJ; Transcription factor TDR | ||||
| TrEMBL | A0A0D9YLG2 | 0.0 | A0A0D9YLG2_9ORYZ; Uncharacterized protein | ||||
| STRING | OGLUM02G01420.1 | 0.0 | (Oryza glumipatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5530 | 34 | 49 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G16910.1 | 2e-50 | bHLH family protein | ||||
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