PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G03560.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 248aa    MW: 26392.8 Da    PI: 8.9373
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G03560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.94.9e-17156193136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  OGLUM02G03560.1 156 CHHCGISAvsTPMMRRGPDGPRTLCNACGLMWANKGTM 193
                      *****99999*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.2E-72055IPR010399Tify domain
PROSITE profilePS5132012.7942055IPR010399Tify domain
PfamPF062002.5E-102354IPR010399Tify domain
PfamPF062033.6E-1681123IPR010402CCT domain
PROSITE profilePS5101713.38481123IPR010402CCT domain
SMARTSM004011.9E-11150203IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.288150198IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-12154206No hitNo description
CDDcd002024.05E-15155199No hitNo description
Gene3DG3DSA:3.30.50.106.7E-16155196IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.4E-15156193IPR000679Zinc finger, GATA-type
PROSITE patternPS003440156183IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDPHGEMVPV AGGEAGGGYP HVASNTLTLS FQGEVYVFES VSAERVQAVL LLLGGRELAP  60
GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK IRYTVRKEVA LRMQRNRGQF  120
TSSKSKAEEA TSAITSSEGS PNWGAVEGRP PSAAECHHCG ISAVSTPMMR RGPDGPRTLC  180
NACGLMWANK GTMREVTKGP PVPLQIVPAA TNDVQNGIVE ATGVEQHNSA VEEAVSAANG  240
HESQSGVA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622990.10.0GATA transcription factor 17 isoform X1
SwissprotQ6Z4330.0GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0D9YMA10.0A0A0D9YMA1_9ORYZ; Uncharacterized protein
TrEMBLI1NX940.0I1NX94_ORYGL; Uncharacterized protein
STRINGOGLUM02G03560.10.0(Oryza glumipatula)
STRINGORGLA02G0035000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-65ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]