PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G04370.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 318aa    MW: 34549.2 Da    PI: 10.1494
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G04370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.61.5e-561422792139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  OGLUM02G04370.1 142 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 235
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  OGLUM02G04370.1 236 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 279
                      *****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.7E-72129298IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.41E-75133318IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.0E-57142276IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAHSLMAVGP RRLDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRLSVGN  60
ATAAESQGQR CSASPASSPP PVAQSVSGVL SQSLVSPFDP RDPRVTDLKD ALWSGSLTFQ  120
HALSTFAADE NTSGRKFASY TVFKGKAALS MQPILPSFSK LESGGSRVNK NGSVMLTFFP  180
AVGQRKYDYS KKQLFALSPT EVGSLISLGP AESCEFFHDP SMKSSHEGQV KKSLSVTPLG  240
NDSGYFLNIT VLNNLQKTTE RLSLPISKAE FTVMRTALSF ALPHILGWDQ ALTNHQPSPS  300
PASKPRVERP HPDSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A4e-711332958169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B4e-711332958169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C4e-711332958169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D4e-711332958169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-156single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0342e-73WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0D9YMK80.0A0A0D9YMK8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G04370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-73WHIRLY 2