PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G07340.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 323aa MW: 34826.7 Da PI: 9.0105

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G07340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.7	1.1e-06	167	186	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ OGLUM02G07340.1 167 FSCPVCRKTFNRYNNLQMHM 186 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.23E-5	161	189	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.4E-6	167	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.055	167	189	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.492	167	194	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	169	189	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.3E-4	238	272	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	160	252	272	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEDYAQTNLI SRGHGHGHGH HHQPELMKEF PFISLISSTS SCISSSGQQQ QQQQDDDGHG 60 GHDRHQLLRY GCCSGNKQQE EEEEEVTVAL RIGLPAVSSA SASPSPAMAN HGASASSTGV 120 AGDDGGGGAM AGVGVEVESV RRSGGGGGGG QYWIPTAAQI LAGATQFSCP VCRKTFNRYN 180 NLQMHMWGHG SQYRRGGTAA LRGAQPTAML RLPCYCCAAG CRNHIDHPRA RPLKDFRTLQ 240 THYRRRHGAR DFACRRCAKR FAVRGDWRTH EKNCGRLWRC ACGAHFRHKR SLNDHARAFG 300 AAHAHAGAGA EDDGRAAAAG VLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108729	0.0	AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624987.2	1e-148	zinc finger protein WIP5
Swissprot	Q9SVY1	1e-93	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D9YNQ7	0.0	A0A0D9YNQ7_9ORYZ; Uncharacterized protein
STRING	OGLUM02G07340.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	3e-83	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]