PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G07430.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 378aa    MW: 40042.2 Da    PI: 8.3141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G07430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.63.5e-7199375108374
             GRAS 108 geerv.HiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledlelee 193
                       ++rv Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++pf+f++l    + +l++  + +
  OGLUM02G07430.1  99 AHRRVlHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFRFHPLilpCTAELAADPTAA 188
                      445555************************88888899*********....****************************554445666668899 PP

             GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsleaklpres 279
                      L+++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r++ a++yys++fd+lea++p++s
  OGLUM02G07430.1 189 LELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAAMDYYSSVFDALEATVPPAS 277
                      ********************8.5666666....*******************888655577788999*************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsv 370
                       +r  vE+e+l+rei  +va+ ga    r + +  W ++ ++aG+ p pls +aa+qa+lllr ++ s+gy+ +++  +g+ +l W++rpL+sv
  OGLUM02G07430.1 278 ADRLAVEQEILSREIDAAVAAPGAGGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEGYKADDDggRGACFLRWQQRPLMSV 371
                      **************************************************************************996667788*********** PP

             GRAS 371 SaWr 374
                      S+W+
  OGLUM02G07430.1 372 SSWQ 375
                      ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.051352IPR005202Transcription factor GRAS
PfamPF035141.2E-6899375IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MIRHVRMPPT LTPTTCSAHH QLAIEAAATT PRPPSSRSRS RSRHCRRARG AARRGGSCSR  60
APTSSTGGTS TGRAASPKPC SPPPTHAARL EAAADAGGAH RRVLHIVDLD AAHGVQWPPL  120
LQAIADRADP AVGPPPEVRL TGAGTDRDVL LRTGDRLRAF SSSLNLPFRF HPLILPCTAE  180
LAADPTAALE LHPDETLAVN CVLFLHKLGG DGELAAFLRW VKSMNPAVVT IAEREGVLGG  240
DVDDDNVPDE LPRRVAAAMD YYSSVFDALE ATVPPASADR LAVEQEILSR EIDAAVAAPG  300
AGGGGRARDF DAWASAARAA GLAPRPLSAF AASQARLLLR LHYPSEGYKA DDDGGRGACF  360
LRWQQRPLMS VSSWQPQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-35104376129379Protein SCARECROW
5b3h_D1e-35104376129379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041910.0AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624347.21e-176protein MONOCULM 1-like
RefseqXP_025879052.11e-176protein MONOCULM 1-like
SwissprotQ84MM91e-107MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0D9YNR60.0A0A0D9YNR6_9ORYZ; Uncharacterized protein
STRINGOGLUM02G07430.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-53GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]