PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G08720.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 254aa MW: 28223.6 Da PI: 5.0711

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G08720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.5	2.6e-36	12	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrF+Ptde+lv +yL+++++++++ + i+++d+y+v+Pw+Lp +++++++++ yfF+++++++ +++r+t sg+Wk tg++k+++ OGLUM02G08720.1 12 MPPGFRFQPTDEQLVIDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTTAAREA----QARRTTPSGFWKPTGTKKTIF 100 79***********************988.55***********778888999***99875....7899************9 PP NAM 94 sk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 ++ + +k+ ++fy +g++++ +kt+W+mhey+l OGLUM02G08720.1 101 IVaggHEVPTAVKRRFIFYlghhqpSGSSSNNNKTSWIMHEYHL 144 9876666669*****88887778899999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-41	4	179	IPR003441	NAC domain
PROSITE profile	PS51005	40.608	12	179	IPR003441	NAC domain
Pfam	PF02365	2.0E-21	13	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MAMTPQLAFS RMPPGFRFQP TDEQLVIDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM 60 AMYGSDHDRY FFTTAAREAQ ARRTTPSGFW KPTGTKKTIF IVAGGHEVPT AVKRRFIFYL 120 GHHQPSGSSS NNNKTSWIMH EYHLMNPPRA AAVPSSSSVN PLPTDDLTEE MVLCRISNKD 180 LPKPPYIHNG LLQFSSVGLN GDGYNYLILD HLEPPAMEYP NVGIGNVDDA AAGTDDPGDL 240 DEEIDDSMQR NHGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	12	179	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	12	179	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	12	179	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	12	179	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-28	12	179	20	168	NAC domain-containing protein 19
3swm_B	2e-28	12	179	20	168	NAC domain-containing protein 19
3swm_C	2e-28	12	179	20	168	NAC domain-containing protein 19
3swm_D	2e-28	12	179	20	168	NAC domain-containing protein 19
3swp_A	2e-28	12	179	20	168	NAC domain-containing protein 19
3swp_B	2e-28	12	179	20	168	NAC domain-containing protein 19
3swp_C	2e-28	12	179	20	168	NAC domain-containing protein 19
3swp_D	2e-28	12	179	20	168	NAC domain-containing protein 19
4dul_A	1e-28	12	179	17	165	NAC domain-containing protein 19
4dul_B	1e-28	12	179	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107283	0.0	AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBank	EF122479	0.0	EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625739.1	0.0	NAC domain-containing protein 48-like
TrEMBL	A0A0D9YP92	0.0	A0A0D9YP92_9ORYZ; Uncharacterized protein
STRING	OGLUM02G08720.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16540	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	1e-30	NAC domain containing protein 32