PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G09240.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 619aa    MW: 64159 Da    PI: 8.0922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G09240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11427470553
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++ 
  OGLUM02G09240.1 427 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 470
                      8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-16421492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-15426491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9427470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.46E-5437471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MDTIFVLGQE SLQRILHRAA ARLPGCAYVC AWAPLPLVAA AGLHHQRPSS GGAAGAARLL  60
YCVDGWLSGG EDGGGGVRAL FDAYRGSVCG AVTGCVPGWA YVGGGGGAFM ELSELELVAS  120
ASLPVQQSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGGGGGSLQ ASVEQVFSED  180
FFQQSLLEEL LQLPPTRPSS SSSSLVGSPA DGAASTSLLR TMTPMMASSS ATPSPRELAA  240
QVATTTTTTT TPSSSSRLHP RPPAPHHVHV SPFSRHGGVG GSGVLHFPSA EADDAAMAQA  300
MLDVISSPST SSSAAALHAP WSSVKHRAQI IRSPRRGTPT TTAFRAYNAA LAPRAAASRR  360
PPGEPGQRMI KMGFSILRRM HMVRCSQERA AAATAAASAA AAQRSGGDDD EDATAAPPPP  420
TSSQLHHMIS ERRRRERLNE SFEHLRGLLP PGSKKDKATV LAKTLEYMNL LIAQISELEA  480
KNRALQTQIH QRANGSSSSR SSMIRTVNEV HHHHHHQWLA VAAAAGGSPE RVQVHVIGGG  540
DHDGGASASS SSSSAPEVTV RVAVRAPERG GADVSELVLR VLALLKAMGG FTVVAVDARQ  600
PGGGGGNGTS VDSCAYLTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430435ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057970.0AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623939.10.0putative transcription factor bHLH041
TrEMBLA0A0D9YPF80.0A0A0D9YPF8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G09240.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-12bHLH family protein