PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G12800.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 576aa    MW: 62211.8 Da    PI: 4.4868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G12800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.17.9e-15101521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra.....tk..sgyWkat 86 
                      l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +      +g r++++     t    g W ++
  OGLUM02G12800.1  10 LSPGFKFNPSVEQLLCFFLLPYLRHQRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGHGGRRQQQvsltvTGggGGKWIKQ 103
                      579************************9998888888**********834555677799****999999987776665356552255899**99 PP

              NAM  87 gkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++  ++       +++  +   +L f+  ++ ++ +t Wvmhe+++
  OGLUM02G12800.1 104 RTERPRGEEervvvfgGETFRWEEFSLNFHADERCRSGSTGWVMHEFAV 152
                      99888877644444433334888899****99999999*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-283172IPR003441NAC domain
PROSITE profilePS5100523.43110172IPR003441NAC domain
PfamPF023659.6E-1012151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MATAAESQGL SPGFKFNPSV EQLLCFFLLP YLRHQRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGRRQQQVSL TVTGGGGGKW IKQRTERPRG EEERVVVFGG  120
ETFRWEEFSL NFHADERCRS GSTGWVMHEF AVVPPAGSRV AATHTACRIA FTGHGQKRKR  180
VPDGYVFVDV HVQTAAAAAA AVPPPLPMLC SCAEPPHPGA SHVEHFSDDH PPPHSYTYYT  240
QEYQQFLPAA EQSDQEQEYC LPEQQNFQDY HVAAAEQTDQ DYFYTEMINQ EQDYAYQQQD  300
YAYQQQQQHL FHGDPLATSQ QFLGQDHEVM FTGLGGGLVV SDNGELAAVA APATEPPVHD  360
VFLETLVPEP PENAYVDGAG ESAMASASSA GGAPLLEQPF ATPPQQFLDQ EPAPAGLNDG  420
GAMIYNNNGD GEHDAAPAAQ PPARYYSGPV PAVDSVFLDK MREYLMADAK ELCRIPVEHA  480
PTNNGDHAAA PASAADDPLA AQHGHGSAPP PPPVPPDTAE LERVVGHLLR EVEDIIKVAA  540
AGGYGGSSDK PLSSFDQAQN QILAKLMVVF NQVAES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9YQQ60.0A0A0D9YQQ6_9ORYZ; Uncharacterized protein
STRINGOGLUM02G12800.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123