PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G12910.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 579aa MW: 61206.9 Da PI: 7.281

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G12910.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	42.7	1.5e-13	205	294	7	98
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 w+ +De+ +L l+ +++g++ ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg+ OGLUM02G12910.1 205 WTADDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 294 ************999999954..699*******98865538*******************9965.567889********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.9E-19	205	293	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MARKRRAPTP PPPPPPPPPP EAESSADSSG EEEEGEEEER ESPAAPPPQK PSGRGAAAAA 60 SSDEDEEEED SDTDTYAQGF QLRKVGGGDE EGEEEEEGSG SSESEPEPGP VKKESAKKTK 120 AEAKKKRAAP EPAPSGKAKK AKPEKSAAAA PEPAPSLGKS KKAAKAEAAK AAAAEPAPST 180 GKANKSKSAP EPSPSSKSGK ALSRWTADDE VKILEVLVAH FKSHGTQLNV EGIIAAVGDS 240 LERKSIKYSD MYEKVRRLKQ RYEATAKKVE HGGDLPAKED DLRMYQLSSE IWGKNAKDAG 300 NSSKNKKGQA KKDKVSGDSK EAAKEDKVDE AATAVNEKGG TLAENKKGKT NKQKTGMETK 360 VGSSKEAALA ASPTKGKKKG SHKDKLDEEA KSGTAKVTST IATDDDGTLG GSKREKAGKE 420 ELDGDTHIVM PKEATTTAAR DDGTLVGSKK GKADNGKLDG DTHSVMPKEA TAGTQNGGIL 480 TGGENHKEKV DKDANVPSIR REYAELQSLY PNLASFVNGI EVQHPCGSTF KRAFEFISDD 540 KACTLESKIK KQKIAEVRMQ LRLADTKKEV ANALLGLLD

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MARKRRAPTP PPPPPPPPPP EAESSADSSG EEEEGEEEER ESPAAPPPQK PSGRGAAAAA  60
SSDEDEEEED SDTDTYAQGF QLRKVGGGDE EGEEEEEGSG SSESEPEPGP VKKESAKKTK  120
AEAKKKRAAP EPAPSGKAKK AKPEKSAAAA PEPAPSLGKS KKAAKAEAAK AAAAEPAPST  180
GKANKSKSAP EPSPSSKSGK ALSRWTADDE VKILEVLVAH FKSHGTQLNV EGIIAAVGDS  240
LERKSIKYSD MYEKVRRLKQ RYEATAKKVE HGGDLPAKED DLRMYQLSSE IWGKNAKDAG  300
NSSKNKKGQA KKDKVSGDSK EAAKEDKVDE AATAVNEKGG TLAENKKGKT NKQKTGMETK  360
VGSSKEAALA ASPTKGKKKG SHKDKLDEEA KSGTAKVTST IATDDDGTLG GSKREKAGKE  420
ELDGDTHIVM PKEATTTAAR DDGTLVGSKK GKADNGKLDG DTHSVMPKEA TAGTQNGGIL  480
TGGENHKEKV DKDANVPSIR REYAELQSLY PNLASFVNGI EVQHPCGSTF KRAFEFISDD  540
KACTLESKIK KQKIAEVRMQ LRLADTKKEV ANALLGLLD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626761.1	0.0	neurofilament medium polypeptide
TrEMBL	A0A0D9YQR8	0.0	A0A0D9YQR8_9ORYZ; Uncharacterized protein
STRING	OGLUM02G12910.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37