PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G13300.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 327aa    MW: 35757.4 Da    PI: 7.1876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G13300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12189214126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  OGLUM02G13300.1 189 YQPDICKDYKETGYCGYGDSCKFMHD 214
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9187219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878188216IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7188215IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10189214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12189219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.1E-14261307IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139202.1E-8265306No hitNo description
SuperFamilySSF578501.58E-13265308No hitNo description
SMARTSM001849.1E-5266303IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.734266304IPR001841Zinc finger, RING-type
CDDcd001621.93E-7266307No hitNo description
PROSITE patternPS005180281290IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MADGGGGGGE AGSGGSAPVC SFVRKPPKNI RKRPTAPAGS DDDDEDGSGA IAAARAKKAP  60
SSTSKLFFSS ADGSSEPRRF QYESSRTIQA STDSRATATL ETETEFDRDA RAIRERQLKQ  120
AEESLKKNPS APASGSGSGS GEVYKGIHGY TDYKAGFRRE HTVSSEKAGG SHGPLRASAH  180
IRLSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQIEKEWEE AEKARKRRIA  240
MGGDGSDDEA GEEDDDDDEE ALPFACYICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC  300
FVCNKPTLGI FNAAQEIRKK MAQDKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-6282321100317RING finger protein 113A
5z58_M5e-6282321100317RING finger protein 113A
6ff4_t5e-6282321100317RING finger protein 113A
6ff7_t5e-6282321100317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315670.0CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V30.0C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A0D9YQW80.0A0A0D9YQW8_9ORYZ; Uncharacterized protein
STRINGOGLUM02G13300.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-120C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]