PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G18780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 155aa    MW: 15884.7 Da    PI: 10.4052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G18780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-0986107224
              AP2   2 gykGVrwdkkrgrWvAeIrdpse 24 
                      +y+GVr+++ +g+W+AeIrdp++
  OGLUM02G18780.1  86 HYRGVRRRP-WGKWAAEIRDPNK 107
                      7********.**********843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-1185111IPR001471AP2/ERF domain
PROSITE profilePS5103211.21986111IPR001471AP2/ERF domain
PfamPF008475.3E-586107IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-786123IPR016177DNA-binding domain
SMARTSM003808.5E-686136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSSRQPIGSG GGGAPPDWHD VEPQWQPVDD VVTVAAAAAY LAAPAGATLS SESADRRWRP  60
VGPSAAAAAA ALQAVEAQGA AAAERHYRGV RRRPWGKWAA EIRDPNKAAR ILDFAAQRLV  120
GVSPAMAPRP PSTLPTTTTA ASSPSAWPHG GGHGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313300.0CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623923.12e-46ethylene-responsive transcription factor ERF110
TrEMBLA0A0D9YSY51e-101A0A0D9YSY5_9ORYZ; Uncharacterized protein
STRINGOGLUM02G18780.11e-102(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2696255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-12ERF family protein