PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20200.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 319aa    MW: 33396.6 Da    PI: 12.196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18195244255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa ++++g
  OGLUM02G20200.1 195 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTAEDAARAYDAAELRFRG 244
                      7********.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.778195252IPR001471AP2/ERF domain
SMARTSM003804.7E-33195258IPR001471AP2/ERF domain
PfamPF008473.5E-12195244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-31195254IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22195253IPR016177DNA-binding domain
PRINTSPR003672.0E-11196207IPR001471AP2/ERF domain
CDDcd000187.92E-22203253No hitNo description
PRINTSPR003672.0E-11218234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSCSPPSISN ARFLGSWTFG PPPPPPSRSV AAAATTLLVR GSHARRSKRG ISGGAGCGGG  60
GGARGQATAV GASGAAAEDA RGYDAAALSF PEEASRPRAA RGRVTYSRVV LAVDRSRTGM  120
ARKISVRRRR REHGVLVGSW TSTSAAAAVR DAPGRARLTP LLRGSHGCNG TGDHAGEASV  180
AAAGVVVAAP ATARRYRGVR RRPWGKWAAE IRDPRKAARV WLGTFRTAED AARAYDAAEL  240
RFRGRRAKLN FPEEASRPRR PWKGHDVDHM SCSPPSIANA RFLGSWIFGP PPPSRSVAAA  300
TTTLLGGSHG SNGADNGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21191252163ATERF1
3gcc_A5e-21191252163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9YTF50.0A0A0D9YTF5_9ORYZ; Uncharacterized protein
STRINGOGLUM02G20200.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-18ERF family protein