PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20220.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 223aa    MW: 24604.1 Da    PI: 5.8893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13151195755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rEr RR+r+N+ f+ +r+l+P++     +K s +ei   A+ YIk+Lq
  OGLUM02G20220.1 151 VRERERRRRMNDMFAGIRRLVPNL----PEKSSRVEIIDGAIAYIKMLQ 195
                      59*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-16143217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.516144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-16151215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-6158198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTVRAPLRRT GVLAMASAAL KRYNITAVTS LSMFMFMFYT IPLSCSLLRC TFACFATMSQ  60
EEQRHGRQLP LATSGVITFN GVPLSPLTAG AESDGDDDDV VIVDACNNGK RKVGDGEEEG  120
RGSQGGDDDG DVVAVHGGVG CGGNRACLFA VRERERRRRM NDMFAGIRRL VPNLPEKSSR  180
VEIIDGAIAY IKMLQGEEVR MEAQKQELQR ERDRLAMEYW CID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624470.22e-85uncharacterized protein LOC107276567 isoform X1
TrEMBLA0A0D9YTF71e-163A0A0D9YTF7_9ORYZ; Uncharacterized protein
STRINGOGLUM02G20220.11e-164(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1814277