PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 649aa    MW: 71449.4 Da    PI: 6.5527
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23128228198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + 
  OGLUM02G20880.1 128 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVARDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RG 217
                      99****************************986555545..8************************************************..44 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+v+v+r
  OGLUM02G20880.1 218 ENGELRVGVRR 228
                      9999*****97 PP
2Auxin_resp111.58.5e-37254336183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha+st++ F+v+Y+Pr+s+seFvv+++k+++a ++k+svGmRfkm+fe+++++err+sGt++gv  ++++ W nS WrsLk
  OGLUM02G20880.1 254 ASHAISTGTLFSVFYKPRTSQSEFVVSANKYLEAKNSKISVGMRFKMRFEGDEAPERRFSGTIIGVGSMSTSPWANSDWRSLK 336
                      789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-44117257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-41123243IPR015300DNA-binding pseudobarrel domain
CDDcd100176.96E-22126228No hitNo description
PfamPF023625.0E-21128228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462128230IPR003340B3 DNA binding domain
SMARTSM010191.5E-22128230IPR003340B3 DNA binding domain
PfamPF065071.8E-34254336IPR010525Auxin response factor
PfamPF023092.7E-13506610IPR033389AUX/IAA domain
PROSITE profilePS5174525.519519612IPR000270PB1 domain
SuperFamilySSF542774.9E-12521598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAGSVVAAAA AGGGGTGSSC DALYRELWHA CAGPLVTVPR QGELVYYFPQ GHMEQLEAST  60
DQQLDQHLPL FNLPSKILCK VVNVELRAET DSDEVYAQIM LQPEADQNEL TSPKPEPHEP  120
EKCNVHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMT QNPPWQELVA RDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRLM RQLNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS ANKYLEAKNS KISVGMRFKM  300
RFEGDEAPER RFSGTIIGVG SMSTSPWANS DWRSLKPSPQ PPARNKRARP PASNSIAPEL  360
PPVFGLWKSS AESTQGFSFS GLQRTRELYP SSPNPIFSTS LNVGFSTKNE PSALSNKHFY  420
WPMRETRADS YSASISKVPS EKKQEPSSAG CRLFGIEISS AVEATSPLAA VSGVGQDQPA  480
ASVDAESDQL SQPSHANKSD APAASSEPSP HETQSRQVRS CTKVIMQGMA VGRAVDLTRL  540
HGYDDLCCKL EEMFDIQGEL SASLKKWKVV YTDDEDDMML VGDDPWPEFC SMVKRIYIYT  600
YEEAKQLTPK SKLPIIGDAI KPNPNKQSPE SDMPHSDLDS TAPVTDKDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053361332Auxin response factor 1
4ldw_A0.053361332Auxin response factor 1
4ldw_B0.053361332Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0700260.0AK070026.1 Oryza sativa Japonica Group cDNA clone:J023036G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625501.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A0D9YTN80.0A0A0D9YTN8_9ORYZ; Auxin response factor
STRINGOGLUM02G20880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]