PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20980.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 184aa    MW: 19555.8 Da    PI: 5.0431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-192373155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae+Aa a++ a+++l+g
  OGLUM02G20980.1 23 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFDSAEMAAVAHDVAALRLRG 73
                     68*****998.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-122373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-292482IPR001471AP2/ERF domain
SMARTSM003802.0E-332488IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-202483IPR016177DNA-binding domain
PROSITE profilePS5103223.6832482IPR001471AP2/ERF domain
CDDcd000181.55E-282582No hitNo description
PRINTSPR003678.4E-102536IPR001471AP2/ERF domain
PRINTSPR003678.4E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEQQPQQQQA AAPAMAAGGG GGPQYRGVRR RKWGKWVSEI RQPGTKVRIW LGSFDSAEMA  60
AVAHDVAALR LRGRDGAQLN FPGSVGWLPQ PATTDPVDIR AAAAEAAERV RREPALVSAA  120
ASAAPRRLEL GGGDGEFDEM ESPRLWAEMA EAMLLDPPKW GPDGSDGADG SSQSWAHGSL  180
WDGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-152286367ATERF1
3gcc_A5e-152286367ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058080.0AP005808.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624476.11e-115ethylene-responsive transcription factor ERF027, partial
TrEMBLQ6YVX01e-126Q6YVX0_ORYSJ; Putative AP2 domain-containing protein
STRINGOGLUM02G20980.11e-127(Oryza glumipatula)
STRINGORUFI02G21740.11e-127(Oryza rufipogon)
STRINGOS02T0558700-001e-127(Oryza sativa)
STRINGONIVA02G22690.11e-127(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-20ERF family protein