PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G21200.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 531aa    MW: 55777.6 Da    PI: 6.2379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G21200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12293338555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  OGLUM02G21200.1 293 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 338
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17286349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-13286342No hitNo description
PROSITE profilePS5088817.06288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17290348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9293338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MGGFAYPFTP SPAWSRDAVF AGSPWAAGGV SSLADALVSY GAVDDEEAAF LGKTAASSPS  60
TARLHEQQQL LLEAELLRHG DGLGFAAMDD DGGAAMLGAL EPCAMPLTDS GGPPVICSSS  120
SNDSSGSEHS AAMPAGGGFL VGEQQQHVPP AAYAAGGVLP SMAAGEETPQ SFGFGSLFNG  180
DLLQEANVSK YHHHQQQQQL GVVPSSQPHH LNEFSSGLHH LNLSSLISGP LASFNATQSH  240
RQSAEACGSK NGGAAPFVNL SEVLPKGNGS SSAGNGAPKP RVRARRGQAT DPHSIAERLR  300
REKISDRMKD LQELVPNSNK TNKASMLDEI IDYVKFLQLQ VKVLSMSRLG AAEAVVPLLT  360
ETQTEVNQKN QFTPHSNLYT ALLMQSGQRT GAVNPVKHNA LKDLLKLLMQ SPGFLLSPRS  420
SSGERQAGAG AVTGGLPGDQ PELLDGGAMF EQEVVKLMED NMTTAMQYLQ SKGLCLMPVA  480
LASAISAQKG TSSAAVRPEK KNGGDEEDVK GEFDAPRRPP VGRPKEMRSR V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLA0A0D9YTT30.0A0A0D9YTT3_9ORYZ; Uncharacterized protein
STRINGOGLUM02G21200.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-46LJRHL1-like 3