PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G23790.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 256aa    MW: 27506.7 Da    PI: 5.2847
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G23790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.9e-07446541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ +e+  +   C  ++  lC+ C +e H        H++ p
  OGLUM02G23790.1  4 QCDACESAAAAVVCCADEAALCAACDVEVHAAnklagkHQRLP 46
                     7*******9*********************6678888898877 PP
2zf-B_box279.1e-095485334
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                      ++C+ ++ek + +fC +++ l+C+dC + +H
  OGLUM02G23790.1 54 LPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                     689**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
PfamPF006432.4E-5447IPR000315B-box-type zinc finger
SMARTSM003369.5E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9025299IPR000315B-box-type zinc finger
SMARTSM003364.6E-145299IPR000315B-box-type zinc finger
PfamPF006431.7E-65495IPR000315B-box-type zinc finger
CDDcd000213.07E-75585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKIQCDACES AAAAVVCCAD EAALCAACDV EVHAANKLAG KHQRLPLEAL SARLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFASAS PCDGGSDAHD  120
SDHHAPPMGS SEHHHHHQQP APTVAVDTPS PQFLPQGWAL QKESSPPLGF QELEWFADID  180
LFHNQAPKGG AAAGRTTAEV PELFASQATN DVAYYRPPTR TAAAAFTAAT GFRQRKKARV  240
ELPDDEEDYL IVPDLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018850.0AB001885.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:R1577.
GenBankAK0610440.0AK061044.1 Oryza sativa Japonica Group cDNA clone:006-205-E01, full insert sequence.
GenBankAK1042930.0AK104293.1 Oryza sativa Japonica Group cDNA clone:001-007-G06, full insert sequence.
GenBankAP0041110.0AP004111.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1058_F07.
GenBankAP0064380.0AP006438.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCU4065590.0CU406559.1 Oryza rufipogon (W1943) cDNA clone: ORW1943S101P19, full insert sequence.
GenBankHQ8588050.0HQ858805.1 Oryza sativa Japonica Group isolate UT1183 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626533.11e-159B-box zinc finger protein 25
TrEMBLA0A0D9YUP40.0A0A0D9YUP4_9ORYZ; Uncharacterized protein
STRINGOGLUM02G23790.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.17e-42DBB family protein