PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G24380.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 701aa    MW: 73362.2 Da    PI: 6.8447
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G24380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10301357155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  OGLUM02G24380.1 301 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 357
                      57*******************5444.2455535555.7799999*************98 PP
2AP249.79e-16400451155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  OGLUM02G24380.1 400 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 451
                      89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-16301367No hitNo description
PfamPF008473.8E-8301357IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-14301367IPR016177DNA-binding domain
PROSITE profilePS5103217.108302365IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-11302366IPR001471AP2/ERF domain
SMARTSM003805.8E-22302371IPR001471AP2/ERF domain
PRINTSPR003673.7E-6303314IPR001471AP2/ERF domain
PfamPF008473.2E-10400451IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-18400461IPR016177DNA-binding domain
CDDcd000186.21E-23400461No hitNo description
PROSITE profilePS5103219.467401459IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18401460IPR001471AP2/ERF domain
SMARTSM003808.1E-34401465IPR001471AP2/ERF domain
PRINTSPR003673.7E-6441461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MASANNWLGF SLSGQENPQP HQDSSPPAAI DISGAGDFYG LPTSQPTAAD AHLGVAGHHH  60
HSASYGIMEA FNRGAQEAQD WNMRGLDYNG GASELSMLVG SSGGKRAAAV EETEPKLEDF  120
LGGNSFVSEQ DRHAAVGGFL FSGVPMASST NSNSGSNTME LSMIKTWLRN NGQVPAGHQS  180
QQQQPVAAAA TAQQQAAHEA AEMSTDASAS SFGCSSDAMG RSNNGAVSAA AGGNSQSLAL  240
SMSTGSHSHL PIVVAGGAGG ATAESTSSEN KRASGAMDSP GGGAIEAVPR KSIDTFGQRT  300
SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGTTT  360
TTNFPISNYE KELDEMKHMT RQEYIAYLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR  420
VAGNKDLYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSTLPVGGAA  480
RRLKEAADHA EAAGATIWRA ADMDGAGVIS GLADVGMGAY AASYHHHHHH GWPTIAFQQP  540
PPLAVHYPYG QAPAAPSRGW CKPEQDAAVA AAAHSLQDLQ QLHLGSAAAA AHNFFQASSS  600
STVYNGGGGG YQGLGGNAFL MPASTVVADQ GHSSTATNQG STCSYGNEEQ GKLIGYDAMA  660
MASGAAGGGY QLSQGSASTV SIARANGYSA NWSSPFNGAM G
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1120700.0AK112070.1 Oryza sativa Japonica Group cDNA clone:001-120-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623974.10.0AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ8LSN21e-129BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0D9YUX40.0A0A0D9YUX4_9ORYZ; Uncharacterized protein
STRINGOGLUM02G24380.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-120AP2 family protein